RNA id: TU798216


Basic Information

Item Value
RNA id TU798216
length 1039
lncRNA type intronic
GC content 0.47
exon number 1
gene id G701538
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35768175 ~ 35769213 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtagataacctgtagccagtgggtttggcgacaagtatgaagcgagggccagccaataggtcgcagtggtgagtagtgtatggggctttggtggcaacggatggcaatgtgatagactacatccagtttgctgagtagagtgctggaggctattttatagatgacatcgccacagtcaaggatcggtaggatggtcagttttacttgggtatgtttggcagcatgagtgaaggaagctttgttgcgaaataggaagccgattcttctagatttaatttttgattggagatgcttaatgtgagtctggaaggagagtttacagtttagccaaacacctaggtatttgtagttatccacgtattctaagtcagagccgtccagagtagtgatgctggatgggcgggcaggtgcgggtaatgatcggttgaatagcatgcatttagttttatttgcgtttaagagcagttggaggccacggaaggagagttgtatggcattgaagctcgtctggaggttagttaacacagtgtccaaagaagggccagaagtatacagaatggtgtcgtctgcatagaggtggatcagagaatcaccagcagcaagagcaacatcattgatgtatacagagaagagagtcggcccgagaattgaaccttgtggcacccccatagagactgccagaggcccggacaacaggccctccgatttgacacactgagctctatcagagaagtagttggtgaaccaggcgagacaatcatttgagaaaccaaggctgttgagtctgccaataagaatgtggtgattgacagagtcgaaagccttggccaggtcgatgaatacagctgcacagtaatgtctcttatcgatggcggttatgatatcgttaaggaccttgagcgtggctgaggtgcactcatgaccagctcggaaaccagattgcatagtgtagaaaggtacgatgtgattcgaaatggtcagtaatctgtttgttaacttggctttcgaagaccttagaaatgctgggtaggatagatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU798215 lncRNA downstream 1737 35766223 ~ 35766438 (-) True G701537
TU798214 lncRNA downstream 2154 35765802 ~ 35766021 (-) True G701536
TU798211 lncRNA downstream 6237 35761708 ~ 35761938 (-) True G701533
TU798200 lncRNA downstream 35527 35732241 ~ 35732648 (-) True G701522
TU798156 lncRNA downstream 45403 35722073 ~ 35722772 (-) True G701486
TU798230 lncRNA upstream 29585 35798798 ~ 35799579 (-) True G701552
TU798678 lncRNA upstream 163121 35932334 ~ 35956729 (-) True G701966
TU798725 lncRNA upstream 235030 36004243 ~ 36006929 (-) True G702011
TU798728 lncRNA upstream 240279 36009492 ~ 36009856 (-) True G702014
TU798731 lncRNA upstream 246662 36015875 ~ 36016190 (-) True G702017
XM_021612490.2 mRNA downstream 7606 35708041 ~ 35760569 (-) False LOC110529866
XM_021612491.2 mRNA downstream 7606 35708041 ~ 35760569 (-) False LOC110529866
XM_036985388.1 mRNA downstream 7606 35708808 ~ 35760569 (-) False LOC110529866
XM_021612493.2 mRNA downstream 7606 35708834 ~ 35760569 (-) False LOC110529866
XM_036985389.1 mRNA downstream 7606 35739148 ~ 35760569 (-) True LOC110529866
XM_036985395.1 mRNA upstream 132438 35901651 ~ 35906697 (-) False LOC118936680
XM_036985397.1 mRNA upstream 132439 35901652 ~ 35906699 (-) False LOC118936680
XM_036985396.1 mRNA upstream 132439 35901652 ~ 35906701 (-) True LOC118936680
XM_036985398.1 mRNA upstream 147027 35916240 ~ 35919219 (-) False LOC110529868
XM_036985399.1 mRNA upstream 147027 35916240 ~ 35920906 (-) False LOC110529868
TU798046 other downstream 62862 35641355 ~ 35705313 (-) True LOC110529865
TU798044 other downstream 80539 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other downstream 80710 35641355 ~ 35687465 (-) False LOC110529865
TU798118 other downstream 178298 35582998 ~ 35589877 (-) True G701454
TU795985 other downstream 1744290 34023291 ~ 34023885 (-) True ankef1a
TU798297 other upstream 131410 35900623 ~ 35904272 (-) False G701618
TU798300 other upstream 131410 35900623 ~ 35918175 (-) True G701618
TU800348 other upstream 1585883 37355096 ~ 37361593 (-) True LOC110529880
TU800488 other upstream 1720014 37489227 ~ 37492157 (-) True LOC110530908
TU801610 other upstream 2268512 38037725 ~ 38038346 (-) True G704702

Expression Profile