RNA id: TU797437


Basic Information

Item Value
RNA id TU797437
length 249
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G700827
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35845819 ~ 35846302 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGGAAGAGTCCTCCCACCCAGGCCAAGAAGCCTAACGGCTCTCCTGAGCCCACCATAGAGCTGGAGATCAAGTCAGAGTGTAACTGGGAACAGCATTGGAAACTGGGCGTTCTGTGTCGGCGCATGACCCAGAACCGTCTGTCCGAACCCTTCAACATCGGCTGCTACCACGTCCACAtcctctccaacacacacacatgcaaagcCGAGGGCTACATCATCATATTGAAGGTGCACATCCAGTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU797386 lncRNA upstream 77233 35768355 ~ 35768586 (+) True G700778
TU797385 lncRNA upstream 78743 35766756 ~ 35767076 (+) True G700777
TU797375 lncRNA upstream 91473 35754145 ~ 35754346 (+) True G700767
TU797373 lncRNA upstream 92737 35752837 ~ 35753082 (+) True G700765
TU797369 lncRNA upstream 97693 35747880 ~ 35748126 (+) True G700761
TU797227 lncRNA downstream 7248 35853550 ~ 35854673 (+) False G700652
TU797229 lncRNA downstream 7248 35853550 ~ 35853979 (+) False G700652
TU797231 lncRNA downstream 7248 35853550 ~ 35854626 (+) True G700652
TU798392 lncRNA downstream 164466 36010768 ~ 36010992 (+) True G701706
TU798394 lncRNA downstream 166214 36012516 ~ 36012817 (+) True G701708
XM_021612478.2 mRNA upstream 249415 35574306 ~ 35596404 (+) False LOC110529863
XM_036985379.1 mRNA upstream 249415 35574306 ~ 35596404 (+) False LOC110529863
XM_021612480.2 mRNA upstream 249415 35578590 ~ 35596404 (+) True LOC110529863
XM_021612477.2 mRNA upstream 249416 35574306 ~ 35596403 (+) False LOC110529863
XM_021612471.2 mRNA upstream 307482 35514935 ~ 35538337 (+) True znf410
XM_036985394.1 mRNA downstream 8658 35854960 ~ 35891416 (+) False LOC110529234
XM_036985391.1 mRNA downstream 8666 35854968 ~ 35901652 (+) False LOC110529234
XR_005052867.1 mRNA downstream 8667 35854969 ~ 35900757 (+) False LOC110529234
XR_005052866.1 mRNA downstream 8668 35854970 ~ 35900968 (+) False LOC110529234
XM_036985393.1 mRNA downstream 8670 35854972 ~ 35901652 (+) False LOC110529234
TU797266 other upstream 231153 35613164 ~ 35614666 (+) True G700685
TU797136 other upstream 383779 35454848 ~ 35462040 (+) True LOC110529856
TU796067 other upstream 1717518 34127593 ~ 34128301 (+) True G699605
TU790056 other upstream 6053072 29790997 ~ 29792747 (+) True G694036
TU789469 other upstream 6907546 28935489 ~ 28938273 (+) True cdca4
TU797474 other downstream 57747 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 854136 36700438 ~ 36700739 (+) True G702415
TU799461 other downstream 1212043 37058345 ~ 37059223 (+) False G702687
TU799594 other downstream 1402435 37248737 ~ 37249809 (+) True G702817
TU800686 other downstream 1924562 37770864 ~ 37771635 (+) True G703835

Expression Profile