RNA id: TU797227


Basic Information

Item Value
RNA id TU797227
length 1124
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G700652
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35853550 ~ 35854673 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAGATAGAGGAAcataacaaacaaataaacaaacaaagcgctcatccacaacatagaTAAGTATAATACATATTGCTTATATTAACTATGAACATTGACATAAGTGTGAAATGTATGTACTAAGACAGAGAAGTTAACTTGTGTGCCGACCCACATTGTTACCTTATCTGATAAtggagcagggaggagtgatgaatgtgtgcgtgcgttaaagaaccaaatgctgcccgcggccagtgacggacttctacttcacaaaagccaactgacatttactcctgaggtgctgatttgctgcaccctcgacaactactgtgattattatttgaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccacccctcatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgttcttctacacctgcattgcttgatgtttggggttttagctgggtttctgtacagcactttgagatatcagctgatgtacgaaggactatataaatacatttgatttgatactatttattttattatttctacAGTCACAACCATGTTAAATATTTTAATTTGCTTTATGAATTGCTTCCCTGTCTGTTTTTACAATGGTAGTCCTCGTTCAATGATTCTCATGTCTGATTTGAGGAATTTATGCGTCACGTCAACATTTTTGTTATCTTACTTGTAGTCAAAAGACATTTGTTTCAATCTTGTGTGTCAAACAATCACGATTaaattatagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatacaaatACTCGTTGTAAATGTTTGTCTGACTTGAGGGTTGAATAATGCTtctcaatgcattttttttttgtaaagaaaAGACTGCTATGTCGGTCACTGGGATGTGCTGGCAAGATACTGTGGCCTTAAATGAATTAAACCGTATACATTTGTTGTATACATTGCAGTTGTTGTAACCTGCACGAAACGCGACGAGGTGGTGGAATAATATCGAATGTGGAATAATAAAATGGAACACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU797437 lncRNA upstream 7248 35845819 ~ 35846302 (+) True G700827
TU797386 lncRNA upstream 84964 35768355 ~ 35768586 (+) True G700778
TU797385 lncRNA upstream 86474 35766756 ~ 35767076 (+) True G700777
TU797375 lncRNA upstream 99204 35754145 ~ 35754346 (+) True G700767
TU797373 lncRNA upstream 100468 35752837 ~ 35753082 (+) True G700765
TU798392 lncRNA downstream 156095 36010768 ~ 36010992 (+) True G701706
TU798394 lncRNA downstream 157843 36012516 ~ 36012817 (+) True G701708
TU798399 lncRNA downstream 168433 36023106 ~ 36023309 (+) True G701713
TU798413 lncRNA downstream 197081 36051754 ~ 36052020 (+) True G701727
TU798324 lncRNA downstream 198270 36052943 ~ 36077605 (+) True G701642
XM_021612478.2 mRNA upstream 257146 35574306 ~ 35596404 (+) False LOC110529863
XM_036985379.1 mRNA upstream 257146 35574306 ~ 35596404 (+) False LOC110529863
XM_021612480.2 mRNA upstream 257146 35578590 ~ 35596404 (+) True LOC110529863
XM_021612477.2 mRNA upstream 257147 35574306 ~ 35596403 (+) False LOC110529863
XM_021612471.2 mRNA upstream 315213 35514935 ~ 35538337 (+) True znf410
XM_036985394.1 mRNA downstream 287 35854960 ~ 35891416 (+) False LOC110529234
XM_036985391.1 mRNA downstream 295 35854968 ~ 35901652 (+) False LOC110529234
XR_005052867.1 mRNA downstream 296 35854969 ~ 35900757 (+) False LOC110529234
XR_005052866.1 mRNA downstream 297 35854970 ~ 35900968 (+) False LOC110529234
XM_036985393.1 mRNA downstream 299 35854972 ~ 35901652 (+) False LOC110529234
TU797266 other upstream 238884 35613164 ~ 35614666 (+) True G700685
TU797136 other upstream 391510 35454848 ~ 35462040 (+) True LOC110529856
TU796067 other upstream 1725249 34127593 ~ 34128301 (+) True G699605
TU790056 other upstream 6060803 29790997 ~ 29792747 (+) True G694036
TU789469 other upstream 6915277 28935489 ~ 28938273 (+) True cdca4
TU797474 other downstream 49376 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 845765 36700438 ~ 36700739 (+) True G702415
TU799461 other downstream 1203672 37058345 ~ 37059223 (+) False G702687
TU799594 other downstream 1394064 37248737 ~ 37249809 (+) True G702817
TU800686 other downstream 1916191 37770864 ~ 37771635 (+) True G703835

Expression Profile