RNA id: TU798300


Basic Information

Item Value
RNA id TU798300
length 2016
RNA type TUCP
GC content 0.41
exon number 3
gene id G701618
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35900623 ~ 35918175 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCGTGCCCTACAACCTGAACCTACAAAGAGGCATCTACGACAAGATGATGATCACCATCATGGGCCGGGTCAAACCAAATGCTAAGCAGTTCACAGTGAACTTTGTGCGTGGTAATGACATTGCCTTCCACCTCAACCCTCGGTTCAACGACGGGGGCAAGCAGGCAGTGGTGAGGAACACCATGGTGGGAGAGcgctgggggaaggaggagaggcacACACAGGGAGGCTTCCCCTTCATGGCTGGACAGTCCTTCGAGATGAAGATTCTGGTTACATCTGGGGAGTTCAAGGTGGCTGTGAACAGAGCACAGCTGTTTGAGTTTAAACACCGTGTCAGAGAACTCAGCCAGATCGATCGCGTCAACATCCTCTATGATGTCATCCTCACCTCCATCAACGTAGAAACAATGCCATgacacccacatacagtatataacaccCAGCAGAGGCTACATGCATAACATGGCATCAATCTGCATTTGTCTTTGCACCCGTTTTATGATGATAATGAGCTGTACACTTAAAACCACATTAATTCCCACTAACAAACACTCCATCTGCAAATGTGTGTAATGTTAAAAGGCCTAAGAATTCAACACTGCCATTTAATGGTAATTCTTATATTTCATAACTTTTTTCTGTTGAATgtctatataaatatacatacttTATGACTTTGAACTGACTAAAGATATCAGTAGTTACAGAACGTCTCTATATGAGAGGATTCAGCGTCCTTCAGGGGTCGTTTTTAGAATCTAACCAGCTGGGTTAATTTTTGCCACTGTCAATCAGTTGGTAGAgtatggcgcttgcaacgccagggttgtgggttcgatacCCATGGTAGAACAGTATggtaaaaaagtatgaaaatgtatgcacgcactactataagtcgctctggataagagcgcctgctaaatgactaaaatgtcaaatgtaaaattGTATGAAATAAAACCATTAAATTGAATGAAGTTATCTTTGAAATATTTTTATTGTATCAGACCTCTCATACAACTGCAATATCAAGACAGGTTTGACAGTCAACTCGATGCACACAAACAAATCACATTCACACAACACTCACAATAAAACCAGGGGAAATAGAGACATTAAGCATAGATTCAAAAACATGTGGAGTAAGACACATGATCATCATTGAGAAAAGTCAGTGGCATCGCACAGTTAGTGAATGTAAACATGTCTACCCTTGCCGTGCAAGCTAAAAATGTTTGAGAATTCACAGTTAAAAGGATAAAACCGGCATAAAGGATTTATGGCCACTCCATTTTCTTAGGGAAAACCCATGTCATTTTCTCCCCTCAATAGTGGACAGGACATATTTGCCCACAGTGCAGTCCCAGAATAAATTAATTTTTCCTTCCTTCATTCCTCCCTTCATTAATCTCTACAgccattcaaaatcaaatacaaatctaaTCAGTTTATTTGTTATGTGCAGGTGTAAGAAGTACAGTGAAACGATTGCTTACAAGTTCTTCCTCAACGTTGCAGTAGTACTGAGTcatataaaataaatacacacaagACATTTTTAACAACTCATTTATCCATCTTCACtctatttaatattttattaaacTTCTCTATGAGGAAGTGTCCGGTTCTCATTGTCCTTATGATTTGTTGATTACCGAGCgattcctgtctgtgtgtattttCATATGTGTAATACGCATTTAATTCATATGCATGTCTGCTTGAATGCATCTTCTGTGTATGTATCATTTTTAGATCTTGTTGTCCAGTCTCTTCTCCACTGACTTTAGTAAGAGCTCAGAATACTGCTGCAGGAGAGCCAATGTCCTGTCCCCCTCACCTTTGACCCCTACCTCCCCTCTCATTGCTACCTCCTCCCTGAGCCATTTACTTCTATGTACAAGGTGAGGTAGGGAGTCTAGTTCAGTCTTCACTGTTCCCAGGGCCTCAACCAGAACCGTCTCCATCTCCTGCTGCTCTGCATTGACCTCTAACCCACTGCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU798230 lncRNA downstream 101044 35798798 ~ 35799579 (-) True G701552
TU798216 lncRNA downstream 131410 35768175 ~ 35769213 (-) True G701538
TU798215 lncRNA downstream 134185 35766223 ~ 35766438 (-) True G701537
TU798214 lncRNA downstream 134602 35765802 ~ 35766021 (-) True G701536
TU798211 lncRNA downstream 138685 35761708 ~ 35761938 (-) True G701533
TU798678 lncRNA upstream 14159 35932334 ~ 35956729 (-) True G701966
TU798725 lncRNA upstream 86068 36004243 ~ 36006929 (-) True G702011
TU798728 lncRNA upstream 91317 36009492 ~ 36009856 (-) True G702014
TU798731 lncRNA upstream 97700 36015875 ~ 36016190 (-) True G702017
TU798734 lncRNA upstream 101718 36019893 ~ 36020104 (-) True G702020
XM_036985387.1 mRNA downstream 102603 35708041 ~ 35798020 (-) False LOC110529866
XM_021612490.2 mRNA downstream 140054 35708041 ~ 35760569 (-) False LOC110529866
XM_021612491.2 mRNA downstream 140054 35708041 ~ 35760569 (-) False LOC110529866
XM_036985388.1 mRNA downstream 140054 35708808 ~ 35760569 (-) False LOC110529866
XM_021612493.2 mRNA downstream 140054 35708834 ~ 35760569 (-) False LOC110529866
XM_036985404.1 mRNA upstream 134761 36052936 ~ 36058362 (-) False LOC110529870
XM_036985403.1 mRNA upstream 134761 36052936 ~ 36059371 (-) True LOC110529870
XM_036985411.1 mRNA upstream 145362 36063537 ~ 36129888 (-) False LOC110529235
XM_036985405.1 mRNA upstream 145362 36063537 ~ 36206480 (-) False LOC110529235
XM_036985406.1 mRNA upstream 145362 36063537 ~ 36206480 (-) False LOC110529235
TU798046 other downstream 195310 35641355 ~ 35705313 (-) True LOC110529865
TU798044 other downstream 212987 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other downstream 213158 35641355 ~ 35687465 (-) False LOC110529865
TU798118 other downstream 310746 35582998 ~ 35589877 (-) True G701454
TU795985 other downstream 1876738 34023291 ~ 34023885 (-) True ankef1a
TU800348 other upstream 1436921 37355096 ~ 37361593 (-) True LOC110529880
TU800488 other upstream 1571052 37489227 ~ 37492157 (-) True LOC110530908
TU801610 other upstream 2119550 38037725 ~ 38038346 (-) True G704702
TU801790 other upstream 2395314 38313489 ~ 38313803 (-) True G704874
TU803684 other upstream 3301469 39219644 ~ 39226313 (-) True G706683

Expression Profile