RNA id: TU798725


Basic Information

Item Value
RNA id TU798725
length 607
lncRNA type intronic
GC content 0.39
exon number 2
gene id G702011
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 36004243 ~ 36006929 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttggggcatttctatgttttcgacctagtatggttctcaatcagaggcaggtgtcattagttgtctctgattgagaatcatacttaggtagcctgggttgcactgtttgtttgtgggtgattgtctatgttagtggcttgtgtcagcacaggtctcattttgtagcttcacggtcgaatttggtttattgtttttgttactcgtttgtatagtgttcagtctttctttattaaagattttaccatggacacttaccacgccgcatattggtcctctgatccttctcgcctctcctcttcagacgaagaggaggacgaccgtgacagttagaggtttacatacactcaattagtatttggtagcattgcctttaaattgtttaaaacctgttaaggatgctGCGAATTTTAGCAGCTTTTTTTTACAAattgcgcaacatttcaacgtcctgctactcatgccaggaatatagtatatgcatataataagtatgtgtgtatagaaaacactctgaagtttctaaaactggttaaatcatgtctgtggctataacagaacgtgttcaggagtaaaaatcccagggaaaactgttcaccaaaaacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU798678 lncRNA downstream 47514 35932334 ~ 35956729 (-) True G701966
TU798230 lncRNA downstream 204664 35798798 ~ 35799579 (-) True G701552
TU798216 lncRNA downstream 235030 35768175 ~ 35769213 (-) True G701538
TU798215 lncRNA downstream 237805 35766223 ~ 35766438 (-) True G701537
TU798214 lncRNA downstream 238222 35765802 ~ 35766021 (-) True G701536
TU798728 lncRNA upstream 2563 36009492 ~ 36009856 (-) True G702014
TU798731 lncRNA upstream 8946 36015875 ~ 36016190 (-) True G702017
TU798734 lncRNA upstream 12964 36019893 ~ 36020104 (-) True G702020
TU798740 lncRNA upstream 20327 36027256 ~ 36027456 (-) True G702026
TU798753 lncRNA upstream 44585 36051514 ~ 36051821 (-) True G702039
XM_036985399.1 mRNA downstream 83337 35916240 ~ 35920906 (-) False LOC110529868
XM_036985400.1 mRNA downstream 83337 35916240 ~ 35920906 (-) True LOC110529868
XM_036985398.1 mRNA downstream 85024 35916240 ~ 35919219 (-) False LOC110529868
XM_036985396.1 mRNA downstream 97542 35901652 ~ 35906701 (-) True LOC118936680
XM_036985397.1 mRNA downstream 97544 35901652 ~ 35906699 (-) False LOC118936680
XM_036985404.1 mRNA upstream 46007 36052936 ~ 36058362 (-) False LOC110529870
XM_036985403.1 mRNA upstream 46007 36052936 ~ 36059371 (-) True LOC110529870
XM_036985411.1 mRNA upstream 56608 36063537 ~ 36129888 (-) False LOC110529235
XM_036985405.1 mRNA upstream 56608 36063537 ~ 36206480 (-) False LOC110529235
XM_036985406.1 mRNA upstream 56608 36063537 ~ 36206480 (-) False LOC110529235
TU798300 other downstream 86068 35900623 ~ 35918175 (-) True G701618
TU798297 other downstream 99971 35900623 ~ 35904272 (-) False G701618
TU798046 other downstream 298930 35641355 ~ 35705313 (-) True LOC110529865
TU798044 other downstream 316607 35641355 ~ 35687636 (-) False LOC110529865
TU800348 other upstream 1348167 37355096 ~ 37361593 (-) True LOC110529880
TU800488 other upstream 1482298 37489227 ~ 37492157 (-) True LOC110530908
TU801610 other upstream 2030796 38037725 ~ 38038346 (-) True G704702
TU801790 other upstream 2306560 38313489 ~ 38313803 (-) True G704874
TU803684 other upstream 3212715 39219644 ~ 39226313 (-) True G706683

Expression Profile