RNA id: TU798560


Basic Information

Item Value
RNA id TU798560
length 399
lncRNA type intronic
GC content 0.36
exon number 2
gene id G701862
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 36265238 ~ 36266093 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTTATCAGGTAAAACACTACTATTCACTAGGTCTCAAAGCATTTTATCAGGTAAAACACTACTATTCACTGGGTCTCAAAGCATTTTATCAGGTCCATGCTACTATTCACTGGGTCTCAAAGCATTTTATCAGGTCCACACTACTATTCACTGGGTCTCAAAGCATTTTATCAGGTAAAACACTACTATTCACTGGGTCTCAAAGCATTTAATCAGGTAAAACACTACTATTCACTGGGTCTCAAAGCATTTAATCAGGTAAAACACTACTATTCACTGGGTCTCAAAGCATTTAATCAGGTAAAACACTACTATTCACTGGGTCTCAAAGCATTTTATCAGGTAAAACACTACTATTCACTGGGTCTCAAAGCATTTTATCAGGTAAAACACTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU798526 lncRNA upstream 47036 36213665 ~ 36218202 (+) True G701837
TU798324 lncRNA upstream 187633 36052943 ~ 36077605 (+) True G701642
TU798413 lncRNA upstream 213218 36051754 ~ 36052020 (+) True G701727
TU798399 lncRNA upstream 241929 36023106 ~ 36023309 (+) True G701713
TU798394 lncRNA upstream 252421 36012516 ~ 36012817 (+) True G701708
TU799132 lncRNA downstream 363225 36629318 ~ 36629673 (+) True G702387
TU799162 lncRNA downstream 437232 36703325 ~ 36703781 (+) True G702416
TU799164 lncRNA downstream 444160 36710253 ~ 36710500 (+) True G702418
TU799165 lncRNA downstream 445215 36711308 ~ 36711659 (+) True G702419
TU799167 lncRNA downstream 446545 36712638 ~ 36712911 (+) True G702421
XM_021612500.2 mRNA upstream 213958 35936407 ~ 36051280 (+) False LOC110529869
XR_005052869.1 mRNA downstream 198863 36464956 ~ 36467606 (+) True LOC118965513
XM_036985419.1 mRNA downstream 322547 36588640 ~ 36604558 (+) False fermt1
XM_036985421.1 mRNA downstream 322717 36588810 ~ 36604558 (+) False fermt1
XM_036985416.1 mRNA downstream 322865 36588958 ~ 36604558 (+) False fermt1
XM_036985418.1 mRNA downstream 322865 36588958 ~ 36604558 (+) False fermt1
TU797474 other upstream 360540 35904049 ~ 35904698 (+) True G700864
TU797266 other upstream 650572 35613164 ~ 35614666 (+) True G700685
TU797136 other upstream 803198 35454848 ~ 35462040 (+) True LOC110529856
TU796067 other upstream 2136937 34127593 ~ 34128301 (+) True G699605
TU790056 other upstream 6472491 29790997 ~ 29792747 (+) True G694036
TU799161 other downstream 434345 36700438 ~ 36700739 (+) True G702415
TU799461 other downstream 792252 37058345 ~ 37059223 (+) False G702687
TU799594 other downstream 982644 37248737 ~ 37249809 (+) True G702817
TU800686 other downstream 1504771 37770864 ~ 37771635 (+) True G703835
TU801178 other downstream 1959962 38226055 ~ 38229974 (+) True G704281

Expression Profile