RNA id: TU799132


Basic Information

Item Value
RNA id TU799132
length 356
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G702387
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 36629318 ~ 36629673 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTAGGACTTGAACACTGAATGGAAAAACAGCTaaagagaatgaacgaaacagttctgtctggtacagaatacaaaaacagaaaacaactacccacaaatcatagtgggaaaacaggctgcctaagtatggttctcaatcagagacaatgataaacagctgcctctgattgggaaccataccaggccaaacacagaaatacaaaaacatagaacaacacatagaatgcccaccccaactcacgccctgaccaaactaaaatagagacataaaaaaggaactaaggtcaggacgtgacagcaaTCCTGAAAGTGCTGTCTTGTGAATAACaaatagaaaatattaaaaaggtAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU798560 lncRNA upstream 363225 36265238 ~ 36266093 (+) True G701862
TU798526 lncRNA upstream 411116 36213665 ~ 36218202 (+) True G701837
TU798324 lncRNA upstream 551713 36052943 ~ 36077605 (+) True G701642
TU798413 lncRNA upstream 577298 36051754 ~ 36052020 (+) True G701727
TU798399 lncRNA upstream 606009 36023106 ~ 36023309 (+) True G701713
TU799162 lncRNA downstream 73652 36703325 ~ 36703781 (+) True G702416
TU799164 lncRNA downstream 80580 36710253 ~ 36710500 (+) True G702418
TU799165 lncRNA downstream 81635 36711308 ~ 36711659 (+) True G702419
TU799167 lncRNA downstream 82965 36712638 ~ 36712911 (+) True G702421
TU799208 lncRNA downstream 149168 36778841 ~ 36779522 (+) True G702459
XM_021612510.2 mRNA upstream 10308 36605568 ~ 36619010 (+) True trmt6
XM_036985419.1 mRNA upstream 24760 36588640 ~ 36604558 (+) False fermt1
XM_036985421.1 mRNA upstream 24760 36588810 ~ 36604558 (+) False fermt1
XM_036985416.1 mRNA upstream 24760 36588958 ~ 36604558 (+) False fermt1
XM_036985418.1 mRNA upstream 24760 36588958 ~ 36604558 (+) False fermt1
XM_021612515.2 mRNA downstream 12631 36642304 ~ 36662826 (+) False gpcpd1
XM_021612517.2 mRNA downstream 12631 36642304 ~ 36662826 (+) False gpcpd1
XM_036985422.1 mRNA downstream 12631 36642304 ~ 36662826 (+) False gpcpd1
XM_036985423.1 mRNA downstream 12632 36642305 ~ 36662826 (+) True gpcpd1
XM_021612521.2 mRNA downstream 35919 36665592 ~ 36674269 (+) False LOC110529878
TU797474 other upstream 724620 35904049 ~ 35904698 (+) True G700864
TU797266 other upstream 1014652 35613164 ~ 35614666 (+) True G700685
TU797136 other upstream 1167278 35454848 ~ 35462040 (+) True LOC110529856
TU796067 other upstream 2501017 34127593 ~ 34128301 (+) True G699605
TU790056 other upstream 6836571 29790997 ~ 29792747 (+) True G694036
TU799161 other downstream 70765 36700438 ~ 36700739 (+) True G702415
TU799461 other downstream 428672 37058345 ~ 37059223 (+) False G702687
TU799594 other downstream 619064 37248737 ~ 37249809 (+) True G702817
TU800686 other downstream 1141191 37770864 ~ 37771635 (+) True G703835
TU801178 other downstream 1596382 38226055 ~ 38229974 (+) True G704281

Expression Profile