RNA id: TU799700


Basic Information

Item Value
RNA id TU799700
length 247
lncRNA type antisense_over
GC content 0.57
exon number 1
gene id G702915
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 37434522 ~ 37434768 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGTGACCTTCCTCTCGATGTGTCCGTAGTGGAAGTCGCTGCTTTGGATGGCCTGGTAGGCCTTGTGGAGTTTCCAGGCTATGCCGAAATAGGAGAAGAGGATGACGAGGCAGGGGATGAAGGTGCAGAGGATAGACAGAGACATGATGAAGGTGGAACGGTTCAGGGAGTCTTGGTAACTGGCCCAGTCCACGGAACAGGCCACCCCGAAGGGCTCCGGTCCGTAGCCACCCCATCCCAGTAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU799698 lncRNA upstream 929 37433365 ~ 37433593 (+) True G702913
TU799689 lncRNA upstream 20881 37413192 ~ 37413641 (+) True G702904
TU799462 lncRNA upstream 375299 37058345 ~ 37059223 (+) True G702687
TU799455 lncRNA upstream 382653 37050391 ~ 37051869 (+) True G702681
TU799349 lncRNA upstream 503372 36930875 ~ 36931150 (+) True G702583
TU799701 lncRNA downstream 110 37434878 ~ 37435084 (+) True G702916
TU799738 lncRNA downstream 59588 37494356 ~ 37500703 (+) True G702950
TU800617 lncRNA downstream 260452 37695220 ~ 37695845 (+) True G703775
TU800644 lncRNA downstream 291630 37726398 ~ 37746877 (+) True G703801
TU800659 lncRNA downstream 316075 37750843 ~ 37751055 (+) True G703816
XM_021612529.2 mRNA upstream 10333 37386038 ~ 37424189 (+) False mut
XM_021612530.2 mRNA upstream 11881 37385172 ~ 37422641 (+) False mut
XM_021612532.2 mRNA upstream 11881 37385192 ~ 37422641 (+) False mut
XM_021612531.1 mRNA upstream 11881 37388920 ~ 37422641 (+) True mut
XM_036985430.1 mRNA upstream 49680 37365191 ~ 37384842 (+) False fkbp1b
XM_036985436.1 mRNA downstream 27239 37462007 ~ 37474125 (+) True drc1
XM_036986868.1 mRNA downstream 217357 37652125 ~ 37733599 (+) True LOC110530909
XM_036985438.1 mRNA downstream 358240 37793008 ~ 37800489 (+) False LOC110529887
XM_036985437.1 mRNA downstream 358442 37793210 ~ 37800489 (+) False LOC110529887
XM_021612539.2 mRNA downstream 358502 37793270 ~ 37800489 (+) False LOC110529887
TU799594 other upstream 184713 37248737 ~ 37249809 (+) True G702817
TU799461 other upstream 375299 37058345 ~ 37059223 (+) False G702687
TU799161 other upstream 733783 36700438 ~ 36700739 (+) True G702415
TU797474 other upstream 1529824 35904049 ~ 35904698 (+) True G700864
TU797266 other upstream 1819856 35613164 ~ 35614666 (+) True G700685
TU800686 other downstream 336096 37770864 ~ 37771635 (+) True G703835
TU801178 other downstream 791287 38226055 ~ 38229974 (+) True G704281
TU802209 other downstream 1321103 38755871 ~ 38756305 (+) True G705273
TU802471 other downstream 1565728 39000496 ~ 39001878 (+) True adgb
TU802817 other downstream 1968180 39402948 ~ 39403296 (+) True G705853

Expression Profile