RNA id: TU800482


Basic Information

Item Value
RNA id TU800482
length 1785
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G703647
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 37470891 ~ 37472743 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctccctccctccctcccttctcttcttccctcccccctccttaCCTGGGTCTGCTCCCCTTGTGTATGTCTGTACTTCATGAAGAAATCCGCCAGCTTGTACACGTCCTCCTCGCTCTCGATCCCCATGGCCTGGCAGAAAAGAACAGAGCGGAGACAACACTGGCACAGCTCCTCTGTCGCGACTGTCCTGTGTTTATGTGACAGTAAATGTATAGTTACAGGTGACATAACATACATATAGCCGTCACGTTGTAACTCACAGTGAAGATGGAGTCCAGCTTCATGAGGGACTGTTCATCCTTCTCCAGTGGAGAGAGAAGCTTCAGAAGTTTACTCTCTATCAGAAAACCCTgtggaggtgagggagggaaggagagagagacagagaagcttCAGAAGTTTACTCTCTATCAGAAAACCCAgtggaggtgagggagggaaggagagagagacagagaagcttCAGAAGTTTACTCTCTATCAGAAAACCCTgtggaggtgagggagggaaggagagagagacagagaagcttCAGAAGTTTACTCTCTATCAGAAAACCCTGTGGAGGtgacggagggaaggagagagagacagagaagcttCAGAAGTTTACTCTATCAGAAAACCCTGTGGAGgtgagggagggaaggagagagagacagagaagctgTAAAGGCTAAATGTTGAAGTAGTTGAGTTAGATGACacagttcctcttcctctctctattcctctgtcatacagacacacaaactctTAGCCCGCTGTTGGAGGAAATTATAGTTGAAATgattaattatgtatacatttaaattAGAACCATTTATTTTAATACTATTATGTTATGGTATGAAATGTATGGGTTCTTGGTTAAACTAGGACTGAAAATGTAGGTATAACGAATTAATTGTCTGTACCTTGCGGGTTTAAGGGAGAGGGATGGCATCTCTCTTTAGACAGATAAAAACGTTTGTTTTATGATCCATTAGTGGAGAAGAGTATATATTTTTAGACAGATTGGAATGTTTGTTTTATGAGGGGAGTAGAAGACAATTTCCAGACCTGAAGACACTGCGCTATTGTGTGGAtcggagagagtgtgagaaactGATGACGTCACTTTTATCTTCTCTCTTTAAAATGTAATGTTCTTTGTATTTTGGgtcagtactctcttgaattaaacgctGTTACCTGACTTTTAAGACTGGTCTCGATCTATTTCATGCATAAATGATAAACTTACAACTTATTATGAAATAGAGAGAGTGTGAATTTGGTTTTGGCTACAAAACATATAGGAATTTAGAATTCCTCTAACACCCGCTCACCGCCTCGTCACACAGCAGCTCCAGGAGCTTCTTGACAATCTTCACCGACACCGTCCCACTGtgctccccctcactcccttccctctctctctccacctcactgCTCCCACTCTCCAGCCCTGCTCCTGAGTCATACACCTCCACAGCCAACCCAGGGCTCTCTGCCCCAGGCCCAACCCCGGCCTCCTGgtacttccccttccccaggccACTGGTCTGCCCAAGCTGGAGCAGCTCGGAGATTGCCTGGTGCGCAGTCTTCTGGGTCTGTCTATGGGGCTGAAGGGGGCCGCAGCGCTCCATGAAAGCCAGTGATGGGCGCTGCCAGGCCAGGCCCAACTGCTGCTCGTGGACCAGCCGGTCTGTATCCAGGGCCTTCTCCACCAGCGCCTTGACCTCCTCCTCGTTCATCAGCCACACCTCCTCAAACTTCTTGGCATCGATGGCCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU800457 lncRNA downstream 28278 37442267 ~ 37442613 (-) True G703627
TU800378 lncRNA downstream 41068 37428107 ~ 37429823 (-) True G703548
TU800376 lncRNA downstream 47607 37390375 ~ 37423284 (-) True G703547
TU800447 lncRNA downstream 57334 37412941 ~ 37413557 (-) True G703617
TU800328 lncRNA downstream 195675 37252873 ~ 37275216 (-) True G703503
TU800487 lncRNA upstream 2009 37474752 ~ 37477292 (-) True G703648
TU800492 lncRNA upstream 26196 37498939 ~ 37506549 (-) True G703653
TU800526 lncRNA upstream 76184 37548927 ~ 37586929 (-) True G703684
TU800895 lncRNA upstream 277859 37750602 ~ 37750921 (-) True G704025
TU800898 lncRNA upstream 280724 37753467 ~ 37753666 (-) True G704028
XM_021612533.2 mRNA downstream 13956 37425738 ~ 37456935 (-) True opn8a
XM_021612526.2 mRNA downstream 108969 37355100 ~ 37361922 (-) False LOC110529880
XR_005052873.1 mRNA downstream 199631 37149323 ~ 37271260 (-) False LOC110529879
XR_005052870.1 mRNA downstream 199788 37149323 ~ 37271103 (-) False LOC110529879
XM_036985435.1 mRNA upstream 1486 37474229 ~ 37626960 (-) False LOC110530908
XM_036985432.1 mRNA upstream 4589 37477332 ~ 37626960 (-) False LOC110530908
XM_036985434.1 mRNA upstream 4589 37477332 ~ 37626960 (-) False LOC110530908
XM_036985431.1 mRNA upstream 4721 37477464 ~ 37626960 (-) False LOC110530908
XM_036985433.1 mRNA upstream 4721 37477464 ~ 37626960 (-) False LOC110530908
TU800348 other downstream 109298 37355096 ~ 37361593 (-) True LOC110529880
TU798300 other downstream 1552716 35900623 ~ 35918175 (-) True G701618
TU798297 other downstream 1566619 35900623 ~ 35904272 (-) False G701618
TU798046 other downstream 1765578 35641355 ~ 35705313 (-) True LOC110529865
TU798045 other downstream 1783426 35641355 ~ 35687465 (-) False LOC110529865
TU800488 other upstream 16484 37489227 ~ 37492157 (-) True LOC110530908
TU801610 other upstream 564982 38037725 ~ 38038346 (-) True G704702
TU801790 other upstream 840746 38313489 ~ 38313803 (-) True G704874
TU803684 other upstream 1746901 39219644 ~ 39226313 (-) True G706683
TU804129 other upstream 2484218 39956961 ~ 39959613 (-) True slc22a16

Expression Profile