RNA id: TU800659


Basic Information

Item Value
RNA id TU800659
length 213
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G703816
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 37750843 ~ 37751055 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtaatgtaatgagtGTAGCAGACAGCCACAGTAGATGGCATTTAATAGCCAATAGCCTGGGCCTTCTGTCACCAACTAGGCATCTAATCTGGGTAGTCTATTTAACTCTAGAACTGCCTTACGCCAACGGCCACTGACATTTGATTTTGTAAACAAAAGAAATCATGCAAATAAAGCAACTTCCTGTTCCTTCCCTGACGTTtcctaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU800644 lncRNA upstream 3966 37726398 ~ 37746877 (+) True G703801
TU800617 lncRNA upstream 54998 37695220 ~ 37695845 (+) True G703775
TU799738 lncRNA upstream 250140 37494356 ~ 37500703 (+) True G702950
TU799701 lncRNA upstream 315759 37434878 ~ 37435084 (+) True G702916
TU799700 lncRNA upstream 316075 37434522 ~ 37434768 (+) True G702915
TU800679 lncRNA downstream 11494 37762549 ~ 37762789 (+) True G703828
TU800682 lncRNA downstream 14008 37765063 ~ 37765474 (+) True G703831
TU800688 lncRNA downstream 23906 37774961 ~ 37775268 (+) True G703837
TU800694 lncRNA downstream 26384 37777439 ~ 37777638 (+) True G703839
TU800696 lncRNA downstream 27957 37779012 ~ 37779230 (+) True G703841
XM_036986868.1 mRNA upstream 17244 37652125 ~ 37733599 (+) True LOC110530909
XM_036985436.1 mRNA upstream 276718 37462007 ~ 37474125 (+) True drc1
XM_021612529.2 mRNA upstream 326654 37386038 ~ 37424189 (+) False mut
XM_021612530.2 mRNA upstream 328202 37385172 ~ 37422641 (+) False mut
XM_036985438.1 mRNA downstream 41953 37793008 ~ 37800489 (+) False LOC110529887
XM_036985437.1 mRNA downstream 42155 37793210 ~ 37800489 (+) False LOC110529887
XM_021612539.2 mRNA downstream 42215 37793270 ~ 37800489 (+) False LOC110529887
XM_021612538.2 mRNA downstream 42216 37793271 ~ 37801032 (+) False LOC110529887
XM_021612537.1 mRNA downstream 42675 37793730 ~ 37801035 (+) True LOC110529887
TU799594 other upstream 501034 37248737 ~ 37249809 (+) True G702817
TU799461 other upstream 691620 37058345 ~ 37059223 (+) False G702687
TU799161 other upstream 1050104 36700438 ~ 36700739 (+) True G702415
TU797474 other upstream 1846145 35904049 ~ 35904698 (+) True G700864
TU797266 other upstream 2136177 35613164 ~ 35614666 (+) True G700685
TU800686 other downstream 19809 37770864 ~ 37771635 (+) True G703835
TU801178 other downstream 475000 38226055 ~ 38229974 (+) True G704281
TU802209 other downstream 1004816 38755871 ~ 38756305 (+) True G705273
TU802471 other downstream 1249441 39000496 ~ 39001878 (+) True adgb
TU802817 other downstream 1651893 39402948 ~ 39403296 (+) True G705853

Expression Profile