RNA id: TU800908


Basic Information

Item Value
RNA id TU800908
length 519
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G704035
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 37760267 ~ 37760785 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATCACAATCAGGGTGTGGTGTGTTGGTGGCCTGACCTGTCTGGTGATTTTCAGATTGAGATAATCCTGTATTGTGTTCCTGTAACAGATTCAACTAGTTGATCCTGTTTCAGTCACACTCAGTAAATCCCTAGCCCTTGAGTCACTGGCCGCTGGACCACAGTGGAACACCATCTGTGAAATGACTTGTATTCTAGGGCCATTGGTCCCAGGGAGATCTGGAAAACCAAGTGAATGAACTCTATGACTgattgcaaaaatccctgaagctggatactcatatctccctcactagctttaagcaccagttgtcagagcagctcacagatcactgcacctgtacattgcccatctgtaaatagcccatccaactacctcatccccatactgtatttatttatcttgctcttttgcaccccagtatctctacttgcacattcatcttctgcacatctaccattccagtgtttaattgctatattgtagttacttcgccaccatggcctatttattgccttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU800898 lncRNA downstream 6601 37753467 ~ 37753666 (-) True G704028
TU800895 lncRNA downstream 9346 37750602 ~ 37750921 (-) True G704025
TU800526 lncRNA downstream 173338 37548927 ~ 37586929 (-) True G703684
TU800492 lncRNA downstream 253718 37498939 ~ 37506549 (-) True G703653
TU800487 lncRNA downstream 282975 37474752 ~ 37477292 (-) True G703648
TU800913 lncRNA upstream 1562 37762347 ~ 37762806 (-) True G704036
TU800914 lncRNA upstream 10490 37771275 ~ 37771522 (-) True G704037
TU800916 lncRNA upstream 14271 37775056 ~ 37775261 (-) True G704039
TU800919 lncRNA upstream 16691 37777476 ~ 37777685 (-) True G704042
TU800920 lncRNA upstream 16959 37777744 ~ 37778154 (-) True G704043
XM_036985435.1 mRNA downstream 133307 37474229 ~ 37626960 (-) False LOC110530908
XM_021612540.2 mRNA upstream 21389 37782174 ~ 37792728 (-) True sod2
XM_021612541.2 mRNA upstream 57087 37817872 ~ 37851843 (-) False acbd3
XM_021612543.2 mRNA upstream 57087 37817872 ~ 37851844 (-) False acbd3
XM_021612544.2 mRNA upstream 57087 37817872 ~ 37851844 (-) False acbd3
XM_021612545.2 mRNA upstream 57087 37817872 ~ 37851844 (-) True acbd3
TU800488 other downstream 268110 37489227 ~ 37492157 (-) True LOC110530908
TU800348 other downstream 398674 37355096 ~ 37361593 (-) True LOC110529880
TU798300 other downstream 1842092 35900623 ~ 35918175 (-) True G701618
TU798297 other downstream 1855995 35900623 ~ 35904272 (-) False G701618
TU798046 other downstream 2054954 35641355 ~ 35705313 (-) True LOC110529865
TU801610 other upstream 276940 38037725 ~ 38038346 (-) True G704702
TU801790 other upstream 552704 38313489 ~ 38313803 (-) True G704874
TU803684 other upstream 1458859 39219644 ~ 39226313 (-) True G706683
TU804129 other upstream 2196176 39956961 ~ 39959613 (-) True slc22a16
TU806574 other upstream 4958986 42719771 ~ 42720699 (-) True G709272

Expression Profile