RNA id: TU800682


Basic Information

Item Value
RNA id TU800682
length 412
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G703831
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 37765063 ~ 37765474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catgctggtaaaaatttggtaaaactgttttaagtttgcctgcattataGTCCCCGGCCACTAAAAGCAcaacttctgggtgagcattttcttctttgcttatggccttatagagttggttgagagcggtcttagagccagcttcgttctgtggtggtaaatagacagctacgaataatatagatgagaactctcttggtagatagtgtggtctacagcttatcataaggtactctacctcaggcgagcaatacctcaagacttctttaatattagacatcgcgcaccagctgtcaTCAAACAAGTTCactactgactttcagcatgcaacttgtactgcactgactcagatgactgatgattggctaaaatggataataagatgatagttggagctgtattgttagatttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU800679 lncRNA upstream 2274 37762549 ~ 37762789 (+) True G703828
TU800659 lncRNA upstream 14008 37750843 ~ 37751055 (+) True G703816
TU800644 lncRNA upstream 18186 37726398 ~ 37746877 (+) True G703801
TU800617 lncRNA upstream 69218 37695220 ~ 37695845 (+) True G703775
TU799738 lncRNA upstream 264360 37494356 ~ 37500703 (+) True G702950
TU800688 lncRNA downstream 9487 37774961 ~ 37775268 (+) True G703837
TU800694 lncRNA downstream 11965 37777439 ~ 37777638 (+) True G703839
TU800696 lncRNA downstream 13538 37779012 ~ 37779230 (+) True G703841
TU800677 lncRNA downstream 16730 37782204 ~ 37792696 (+) True G703826
TU800716 lncRNA downstream 52433 37817907 ~ 37821054 (+) True G703860
XM_036986868.1 mRNA upstream 31464 37652125 ~ 37733599 (+) True LOC110530909
XM_036985436.1 mRNA upstream 290938 37462007 ~ 37474125 (+) True drc1
XM_021612529.2 mRNA upstream 340874 37386038 ~ 37424189 (+) False mut
XM_021612532.2 mRNA upstream 342422 37385192 ~ 37422641 (+) False mut
XM_036985438.1 mRNA downstream 27534 37793008 ~ 37800489 (+) False LOC110529887
XM_036985437.1 mRNA downstream 27736 37793210 ~ 37800489 (+) False LOC110529887
XM_021612539.2 mRNA downstream 27796 37793270 ~ 37800489 (+) False LOC110529887
XM_021612538.2 mRNA downstream 27797 37793271 ~ 37801032 (+) False LOC110529887
XM_021612537.1 mRNA downstream 28256 37793730 ~ 37801035 (+) True LOC110529887
TU799594 other upstream 515254 37248737 ~ 37249809 (+) True G702817
TU799461 other upstream 705840 37058345 ~ 37059223 (+) False G702687
TU799161 other upstream 1064324 36700438 ~ 36700739 (+) True G702415
TU797474 other upstream 1860365 35904049 ~ 35904698 (+) True G700864
TU797266 other upstream 2150397 35613164 ~ 35614666 (+) True G700685
TU800686 other downstream 5390 37770864 ~ 37771635 (+) True G703835
TU801178 other downstream 460581 38226055 ~ 38229974 (+) True G704281
TU802209 other downstream 990397 38755871 ~ 38756305 (+) True G705273
TU802471 other downstream 1235022 39000496 ~ 39001878 (+) True adgb
TU802817 other downstream 1637474 39402948 ~ 39403296 (+) True G705853

Expression Profile