RNA id: TU801046


Basic Information

Item Value
RNA id TU801046
length 454
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G704154
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 37934752 ~ 37935205 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatatgtcgactaaacaggtcaaactaagtgcagaagcaagctttatgatgttttagacacgcaaaacaaacttcaattcaatcggccatcgtctgcccttctcttgagtgctggaacaaaggaatggctgggaccaattcgcgcccatacgcacagcctattctctcgtggcacgcactaatttcactcccatagggtcaattctcgcgggatttgaacgattcaaagctctgaAACtgactgaaagaggacatctagcggaagagatagaaagtgtccccagaatcataactggttgggaagggtgggggccatgacgtcaaagttgctccaactttcatggccacagaaactagtttggaagaatgcctgccctgtgagttctgctatacttacagacataattccaacggttttagaatctttagagtgttttctatccaataataattt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU801019 lncRNA downstream 18251 37916028 ~ 37916501 (-) True G704129
TU801001 lncRNA downstream 31315 37903220 ~ 37903437 (-) True G704114
TU800992 lncRNA downstream 36482 37897674 ~ 37898270 (-) True G704105
TU800981 lncRNA downstream 45539 37888902 ~ 37889213 (-) True G704094
TU800956 lncRNA downstream 120547 37813997 ~ 37814205 (-) True G704072
TU801597 lncRNA upstream 88327 38023532 ~ 38023778 (-) True G704689
TU801604 lncRNA upstream 94394 38029599 ~ 38029849 (-) True G704696
TU801605 lncRNA upstream 94814 38030019 ~ 38030248 (-) True G704697
TU801609 lncRNA upstream 101152 38036357 ~ 38036719 (-) True G704701
TU801611 lncRNA upstream 103818 38039023 ~ 38039249 (-) True G704703
XR_002474628.2 mRNA downstream 2789 37930118 ~ 37931963 (-) True LOC110531088
LOC110530911 mRNA downstream 13341 37905170 ~ 37921411 (-) True LOC110530911
XM_021614211.2 mRNA downstream 54874 37859257 ~ 37879878 (-) True LOC110530910
XM_021612543.2 mRNA downstream 82908 37817872 ~ 37851844 (-) False acbd3
XM_021612544.2 mRNA downstream 82908 37817872 ~ 37851844 (-) False acbd3
XM_021612548.2 mRNA upstream 280640 38215845 ~ 38260820 (-) False LOC110529892
XM_036985440.1 mRNA upstream 280640 38215845 ~ 38260820 (-) True LOC110529892
NM_001124558.1 mRNA upstream 349698 38284903 ~ 38302289 (-) True LOC100136309
XM_021612549.2 mRNA upstream 395488 38330693 ~ 38387308 (-) True LOC110529893
trnal-uaa-3 mRNA upstream 504993 38440198 ~ 38440280 (-) True trnal-uaa-3
TU800488 other downstream 442595 37489227 ~ 37492157 (-) True LOC110530908
TU800348 other downstream 573159 37355096 ~ 37361593 (-) True LOC110529880
TU798300 other downstream 2016577 35900623 ~ 35918175 (-) True G701618
TU798297 other downstream 2030480 35900623 ~ 35904272 (-) False G701618
TU798046 other downstream 2229439 35641355 ~ 35705313 (-) True LOC110529865
TU801610 other upstream 102520 38037725 ~ 38038346 (-) True G704702
TU801790 other upstream 378284 38313489 ~ 38313803 (-) True G704874
TU803684 other upstream 1284439 39219644 ~ 39226313 (-) True G706683
TU804129 other upstream 2021756 39956961 ~ 39959613 (-) True slc22a16
TU806574 other upstream 4784566 42719771 ~ 42720699 (-) True G709272

Expression Profile