RNA id: TU801610


Basic Information

Item Value
RNA id TU801610
length 622
RNA type TUCP
GC content 0.41
exon number 1
gene id G704702
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 38037725 ~ 38038346 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTAATTGGATAAGAATTATTTATGCACACCCAATGGCGTCCGTGGTAACCAATCAAGAAATGTCGCAGTCATTCCGCTTGTTCAAGGGGTGCCGACAGGGGTGCCCTATTTCGCCTGCTCTCTTCGCTATAGCCATGGAACCCCTTGCTACTCGCATTCGGGCATGTGCCGATATAGCTTCTGTTAAAATAAAGGACACACAGCACAAAATTTCCCTATATGCAGACgatgttcttttgtttttgtccaagccTAAAACTTATATTCCACCCTTACTTAACTTGATAAACACATTTGGCTCCTTCTCTGGCTACAAGATAAACTGGCAAAAAAGTGAGTTGATGCCAATATCACGGCCTGTGGATATGCAATTTCTGCAATCTACCCCGTTTAGAACAGTGATGGACAAGTTCACAAGCCTTGGCATTGTAGTGACAAGAGACCTTGATCAGCTATTGAAAGCGAATTGGGACATGAAAATATATCAACTTaaacaaaatatagatttttggaaAACTCTGCCTATCTCCTTGGTTGGTCGTATAAACGCTATTAAAATGGTTGTCCTACCCAGGTTTCTCTACCTCTTCCAATGTCTACCCAATTTCATACCACAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU801609 lncRNA downstream 1006 38036357 ~ 38036719 (-) True G704701
TU801605 lncRNA downstream 7477 38030019 ~ 38030248 (-) True G704697
TU801604 lncRNA downstream 7876 38029599 ~ 38029849 (-) True G704696
TU801597 lncRNA downstream 13947 38023532 ~ 38023778 (-) True G704689
TU801046 lncRNA downstream 102520 37934752 ~ 37935205 (-) True G704154
TU801611 lncRNA upstream 677 38039023 ~ 38039249 (-) True G704703
TU801620 lncRNA upstream 17231 38055577 ~ 38055799 (-) True G704712
TU801635 lncRNA upstream 37919 38076265 ~ 38076501 (-) True G704727
TU801638 lncRNA upstream 41056 38079402 ~ 38079619 (-) True G704730
TU801715 lncRNA upstream 153660 38192006 ~ 38279535 (-) True G704800
XR_002474628.2 mRNA downstream 105762 37930118 ~ 37931963 (-) True LOC110531088
LOC110530911 mRNA downstream 116314 37905170 ~ 37921411 (-) True LOC110530911
XM_021614211.2 mRNA downstream 157847 37859257 ~ 37879878 (-) True LOC110530910
XM_021612543.2 mRNA downstream 185881 37817872 ~ 37851844 (-) False acbd3
XM_021612544.2 mRNA downstream 185881 37817872 ~ 37851844 (-) False acbd3
XM_021612548.2 mRNA upstream 177499 38215845 ~ 38260820 (-) False LOC110529892
XM_036985440.1 mRNA upstream 177499 38215845 ~ 38260820 (-) True LOC110529892
NM_001124558.1 mRNA upstream 246557 38284903 ~ 38302289 (-) True LOC100136309
XM_021612549.2 mRNA upstream 292347 38330693 ~ 38387308 (-) True LOC110529893
trnal-uaa-3 mRNA upstream 401852 38440198 ~ 38440280 (-) True trnal-uaa-3
TU800488 other downstream 545568 37489227 ~ 37492157 (-) True LOC110530908
TU800348 other downstream 676132 37355096 ~ 37361593 (-) True LOC110529880
TU798300 other downstream 2119550 35900623 ~ 35918175 (-) True G701618
TU798297 other downstream 2133453 35900623 ~ 35904272 (-) False G701618
TU798046 other downstream 2332412 35641355 ~ 35705313 (-) True LOC110529865
TU801790 other upstream 275143 38313489 ~ 38313803 (-) True G704874
TU803684 other upstream 1181298 39219644 ~ 39226313 (-) True G706683
TU804129 other upstream 1918615 39956961 ~ 39959613 (-) True slc22a16
TU806574 other upstream 4681425 42719771 ~ 42720699 (-) True G709272
TU806781 other upstream 5132414 43170760 ~ 43171082 (-) True G709454

Expression Profile