RNA id: TU801771


Basic Information

Item Value
RNA id TU801771
length 299
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G704855
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 38280711 ~ 38281009 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACACACCAGGCCTATaatgcgcctcggcagtccagtacgccctgttcctcctccccgcactcaccctgaggtgcgtgtcctcggtccagtaccaccagtaccggcaccacgcaccaggcctacagtgcgcctcgccagtccagagcatccggcaacagtatccagtccagagcgtccggctacagtacccagtactgtcacgccctgaacttagtattctttgttttctttattgttaggtcagggtgtgacagggtgtgacatgggtgatgtatgtgtttttgtactgtctagggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU801715 lncRNA downstream 1176 38192006 ~ 38279535 (-) True G704800
TU801722 lncRNA downstream 50218 38226612 ~ 38230493 (-) True G704806
TU801638 lncRNA downstream 201092 38079402 ~ 38079619 (-) True G704730
TU801635 lncRNA downstream 204210 38076265 ~ 38076501 (-) True G704727
TU801620 lncRNA downstream 224912 38055577 ~ 38055799 (-) True G704712
TU801778 lncRNA upstream 14778 38295787 ~ 38296061 (-) True G704862
TU801793 lncRNA upstream 34697 38315706 ~ 38316015 (-) True G704877
TU802070 lncRNA upstream 376360 38657369 ~ 38657680 (-) True G705135
TU802080 lncRNA upstream 384481 38665490 ~ 38665706 (-) True G705145
TU802190 lncRNA upstream 460333 38741342 ~ 38741544 (-) True G705254
XM_021612548.2 mRNA downstream 19891 38215845 ~ 38260820 (-) False LOC110529892
XM_036985440.1 mRNA downstream 19891 38215845 ~ 38260820 (-) True LOC110529892
XR_002474628.2 mRNA downstream 348748 37930118 ~ 37931963 (-) True LOC110531088
LOC110530911 mRNA downstream 359300 37905170 ~ 37921411 (-) True LOC110530911
XM_021614211.2 mRNA downstream 400833 37859257 ~ 37879878 (-) True LOC110530910
NM_001124558.1 mRNA upstream 3894 38284903 ~ 38302289 (-) True LOC100136309
XM_021612549.2 mRNA upstream 49684 38330693 ~ 38387308 (-) True LOC110529893
trnal-uaa-3 mRNA upstream 159189 38440198 ~ 38440280 (-) True trnal-uaa-3
LOC110530913 mRNA upstream 506504 38787513 ~ 38801952 (-) True LOC110530913
XR_005052874.1 mRNA upstream 541133 38822142 ~ 38824045 (-) False LOC118965515
TU801610 other downstream 242365 38037725 ~ 38038346 (-) True G704702
TU800488 other downstream 788554 37489227 ~ 37492157 (-) True LOC110530908
TU800348 other downstream 919118 37355096 ~ 37361593 (-) True LOC110529880
TU798300 other downstream 2362536 35900623 ~ 35918175 (-) True G701618
TU798297 other downstream 2376439 35900623 ~ 35904272 (-) False G701618
TU801790 other upstream 32480 38313489 ~ 38313803 (-) True G704874
TU803684 other upstream 938635 39219644 ~ 39226313 (-) True G706683
TU804129 other upstream 1675952 39956961 ~ 39959613 (-) True slc22a16
TU806574 other upstream 4438762 42719771 ~ 42720699 (-) True G709272
TU806781 other upstream 4889751 43170760 ~ 43171082 (-) True G709454

Expression Profile