RNA id: TU803684


Basic Information

Item Value
RNA id TU803684
length 356
RNA type TUCP
GC content 0.57
exon number 2
gene id G706683
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 39219644 ~ 39226313 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAAGACAATGACAGGCTGCAGTAGCCTCTGTTCCCCAGCAGGAGGCAGGTTGAGGGCCACAGCCAGGACTGTGCCCAGGGAAGTGCCCACGTACAGGCAGGGTGTGATGGTGCTGTCCCCCTTCCGAGCGAATGTCTCACAGAAGTGGAAGGAGGTGATGGCCTCGCGTGCCTCCTTGTCAATGGAGGTGACGGAGGAGGAGCGTGAACGGCTGAAGGAGTTGTCCCGGTGGTCTAGTGGGTTGGCGCCCCGCGGAGGACATACAGAcaggaggacCAAGTCTGGCTTTAGCTCAGTAGGCAAGCTTAATTTCCGTGACATCTTTGCTGGAAAAAAGAGAACATCCCTCTTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU802385 lncRNA downstream 393555 38823799 ~ 38826089 (-) True LOC118965515
TU802384 lncRNA downstream 396410 38822790 ~ 38823234 (-) False LOC118965515
TU802383 lncRNA downstream 396498 38822129 ~ 38823146 (-) False LOC118965515
TU802228 lncRNA downstream 452255 38764581 ~ 38767389 (-) True G705292
TU802207 lncRNA downstream 465504 38753922 ~ 38754140 (-) True G705271
TU803703 lncRNA upstream 14550 39240863 ~ 39241112 (-) True G706700
TU803706 lncRNA upstream 18753 39245066 ~ 39245432 (-) True G706703
TU803802 lncRNA upstream 162969 39389282 ~ 39389528 (-) True G706797
TU803805 lncRNA upstream 170497 39396810 ~ 39397157 (-) True G706800
TU803821 lncRNA upstream 201836 39428149 ~ 39428369 (-) True G706816
XR_002474630.2 mRNA downstream 166245 39050749 ~ 39053399 (-) True LOC110531091
XR_005052874.1 mRNA downstream 395599 38822142 ~ 38824045 (-) False LOC118965515
LOC110530913 mRNA downstream 417692 38787513 ~ 38801952 (-) True LOC110530913
trnal-uaa-3 mRNA downstream 779364 38440198 ~ 38440280 (-) True trnal-uaa-3
XM_021612549.2 mRNA downstream 832336 38330693 ~ 38387308 (-) True LOC110529893
XM_036985462.1 mRNA upstream 733056 39959369 ~ 40017167 (-) False slc22a16
XM_036986869.1 mRNA upstream 905878 40132191 ~ 40164976 (-) True LOC110530919
XM_036985463.1 mRNA upstream 917598 40143911 ~ 40145193 (-) False LOC118965516
XM_036985464.1 mRNA upstream 917919 40144232 ~ 40145193 (-) True LOC118965516
XM_021612562.2 mRNA upstream 1411958 40638271 ~ 40668799 (-) False armc2
TU801790 other downstream 905841 38313489 ~ 38313803 (-) True G704874
TU801610 other downstream 1181298 38037725 ~ 38038346 (-) True G704702
TU800488 other downstream 1727487 37489227 ~ 37492157 (-) True LOC110530908
TU800348 other downstream 1858051 37355096 ~ 37361593 (-) True LOC110529880
TU798300 other downstream 3301469 35900623 ~ 35918175 (-) True G701618
TU804129 other upstream 730648 39956961 ~ 39959613 (-) True slc22a16
TU806574 other upstream 3493458 42719771 ~ 42720699 (-) True G709272
TU806781 other upstream 3944447 43170760 ~ 43171082 (-) True G709454
TU808567 other upstream 5312480 44538793 ~ 44539504 (-) True G711133
TU810338 other upstream 6231464 45457777 ~ 45458248 (-) True G712814

Expression Profile

TU803684 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
End of interactive chart.

TU803684 Expression in each Bioproject

Bar chart with 6 bars.
TU803684 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU205347 False 1522 lncRNA 0.34 3 CI01000039 4061886 ~ 4071197 (-)
striped catfish (Pangasianodon hypophthalmus) TU205347 True 941 lncRNA 0.36 2 NC_047604.1 29244000 ~ 29244985 (-)
tiger barb (Puntius tetrazona) TU205347 True 1128 lncRNA 0.39 2 NC_056718.1 16698307 ~ 16700980 (+)