RNA id: TU802767


Basic Information

Item Value
RNA id TU802767
length 403
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G705806
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 39330520 ~ 39388526 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggtgaagactgggaAAAtggaggtcagatagatggattttccaacaattaattcaattgaaaattaggacaatggcgccatcgtgcggaatttgtatgaatTGCAGGCAGATtcccattaaattctgttctcttttaacaactggtggaagtgacttatggaaattattttttgctttcagagagcagtttttcttgcgtttttcaatgaaacacacgatctgttatagtcacagccgtgatttaaccagttttataaacttcagagtgttttctatccacacatactaatcatatgcatatactatattcctggcatgagtagcaggacgctgaaaagttgcgcgatttttaacagaattttcaaaaaaggagggggtagaagtaAGAGGTtgttaaagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU802571 lncRNA upstream 90674 39152161 ~ 39239846 (+) True LOC110529897
TU802382 lncRNA upstream 408993 38919280 ~ 38921527 (+) True G705438
TU802307 lncRNA upstream 507667 38822128 ~ 38822853 (+) True G705369
TU802285 lncRNA upstream 521533 38808385 ~ 38808987 (+) True G705348
TU802284 lncRNA upstream 522367 38807947 ~ 38808153 (+) True G705347
TU802839 lncRNA downstream 51422 39439948 ~ 39440159 (+) True G705875
TU802847 lncRNA downstream 59233 39447759 ~ 39448177 (+) True G705883
TU802849 lncRNA downstream 60876 39449402 ~ 39449601 (+) True G705885
TU802851 lncRNA downstream 65372 39453898 ~ 39454101 (+) True G705887
TU802931 lncRNA downstream 152664 39541190 ~ 39541726 (+) True G705965
XM_021614216.2 mRNA upstream 70011 39259698 ~ 39260509 (+) True LOC110530918
XR_002474450.2 mRNA upstream 90666 39237065 ~ 39239854 (+) False LOC110529897
XM_036985455.1 mRNA upstream 95042 39070465 ~ 39235478 (+) False stxbp5a
XM_036985456.1 mRNA upstream 95042 39070466 ~ 39235478 (+) True stxbp5a
XM_036985453.1 mRNA upstream 283291 38929456 ~ 39047229 (+) False adgb
XM_036985458.1 mRNA downstream 74799 39463325 ~ 39796219 (+) False LOC110529898
XM_036985457.1 mRNA downstream 74800 39463326 ~ 39796219 (+) False LOC110529898
XM_036985461.1 mRNA downstream 257443 39645969 ~ 39796219 (+) False LOC110529898
XM_036985459.1 mRNA downstream 298819 39687345 ~ 39796219 (+) False LOC110529898
XM_036985460.1 mRNA downstream 299712 39688238 ~ 39796219 (+) True LOC110529898
TU802471 other upstream 328642 39000496 ~ 39001878 (+) True adgb
TU802209 other upstream 574215 38755871 ~ 38756305 (+) True G705273
TU801178 other upstream 1100546 38226055 ~ 38229974 (+) True G704281
TU800686 other upstream 1558885 37770864 ~ 37771635 (+) True G703835
TU799594 other upstream 2080711 37248737 ~ 37249809 (+) True G702817
TU802817 other downstream 14422 39402948 ~ 39403296 (+) True G705853
TU803252 other downstream 709380 40097906 ~ 40102291 (+) True G706274
TU803205 other downstream 777682 40166208 ~ 40321292 (+) False LOC110530920
TU803204 other downstream 933047 40321573 ~ 40323773 (+) True LOC110530920
TU805103 other downstream 1698172 41086698 ~ 41167970 (+) True G708034

Expression Profile