RNA id: TU802849


Basic Information

Item Value
RNA id TU802849
length 200
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G705885
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 39449402 ~ 39449601 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctatttctgtttcaatctctccctatccctgttCCCGCAGCATTTTTTTCCtctctcgacaagctgaccagaCGGTTTATCTGGCACGGCAAAACCCCTAGGGTTGGCCTGGATAAACTGACCCTTGATTACAGTCAAGGGGGCTTAAACCTCCCCAATTTTAGAATGTACTACTGGGCTGCACACTCTAGGTTTCTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU802847 lncRNA upstream 1225 39447759 ~ 39448177 (+) True G705883
TU802839 lncRNA upstream 9243 39439948 ~ 39440159 (+) True G705875
TU802767 lncRNA upstream 60876 39330520 ~ 39388526 (+) True G705806
TU802571 lncRNA upstream 209556 39152161 ~ 39239846 (+) True LOC110529897
TU802382 lncRNA upstream 527875 38919280 ~ 38921527 (+) True G705438
TU802851 lncRNA downstream 4297 39453898 ~ 39454101 (+) True G705887
TU802931 lncRNA downstream 91589 39541190 ~ 39541726 (+) True G705965
TU802932 lncRNA downstream 92763 39542364 ~ 39542568 (+) True G705966
TU802933 lncRNA downstream 93044 39542645 ~ 39542925 (+) True G705967
TU802936 lncRNA downstream 96216 39545817 ~ 39546115 (+) True G705970
XM_021614216.2 mRNA upstream 188893 39259698 ~ 39260509 (+) True LOC110530918
XR_002474450.2 mRNA upstream 209548 39237065 ~ 39239854 (+) False LOC110529897
XM_036985455.1 mRNA upstream 213924 39070465 ~ 39235478 (+) False stxbp5a
XM_036985456.1 mRNA upstream 213924 39070466 ~ 39235478 (+) True stxbp5a
XM_036985454.1 mRNA upstream 402173 38930994 ~ 39047229 (+) False adgb
XM_036985458.1 mRNA downstream 13724 39463325 ~ 39796219 (+) False LOC110529898
XM_036985457.1 mRNA downstream 13725 39463326 ~ 39796219 (+) False LOC110529898
XM_036985461.1 mRNA downstream 196368 39645969 ~ 39796219 (+) False LOC110529898
XM_036985459.1 mRNA downstream 237744 39687345 ~ 39796219 (+) False LOC110529898
XM_036985460.1 mRNA downstream 238637 39688238 ~ 39796219 (+) True LOC110529898
TU802817 other upstream 46106 39402948 ~ 39403296 (+) True G705853
TU802471 other upstream 447524 39000496 ~ 39001878 (+) True adgb
TU802209 other upstream 693097 38755871 ~ 38756305 (+) True G705273
TU801178 other upstream 1219428 38226055 ~ 38229974 (+) True G704281
TU800686 other upstream 1677767 37770864 ~ 37771635 (+) True G703835
TU803252 other downstream 648305 40097906 ~ 40102291 (+) True G706274
TU803205 other downstream 716607 40166208 ~ 40321292 (+) False LOC110530920
TU803204 other downstream 871972 40321573 ~ 40323773 (+) True LOC110530920
TU805103 other downstream 1637097 41086698 ~ 41167970 (+) True G708034
TU805139 other downstream 1831237 41280838 ~ 41281481 (+) True LOC110529918

Expression Profile