RNA id: TU802933


Basic Information

Item Value
RNA id TU802933
length 281
lncRNA type intronic
GC content 0.56
exon number 1
gene id G705967
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 39542645 ~ 39542925 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagtgaaacgggtccggataggtgactgcagcccaggagtgaatgatggaacccAGGAgcgattgacggagctggctagcaccggaacaatcgatgtttgctccggaatcgacgaaagccgactgtcacacggatagcagctagctagctgtgagatccgggcatgaatgtccagagagcagccGAAATCCAGGGACACGGAGAGAAAAactggtccggtatgttccgctccgagccgcgctgcgccgtacaaaactggcgatagactttcgagctaaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU802932 lncRNA upstream 77 39542364 ~ 39542568 (+) True G705966
TU802931 lncRNA upstream 919 39541190 ~ 39541726 (+) True G705965
TU802851 lncRNA upstream 88544 39453898 ~ 39454101 (+) True G705887
TU802849 lncRNA upstream 93044 39449402 ~ 39449601 (+) True G705885
TU802847 lncRNA upstream 94468 39447759 ~ 39448177 (+) True G705883
TU802936 lncRNA downstream 2892 39545817 ~ 39546115 (+) True G705970
TU802937 lncRNA downstream 3492 39546417 ~ 39546621 (+) True G705971
TU802946 lncRNA downstream 14633 39557558 ~ 39557765 (+) True G705980
TU802952 lncRNA downstream 21839 39564764 ~ 39565053 (+) True G705986
TU802957 lncRNA downstream 26896 39569821 ~ 39570104 (+) True G705991
XM_021614216.2 mRNA upstream 282136 39259698 ~ 39260509 (+) True LOC110530918
XR_002474450.2 mRNA upstream 302791 39237065 ~ 39239854 (+) False LOC110529897
XM_036985455.1 mRNA upstream 307167 39070465 ~ 39235478 (+) False stxbp5a
XM_036985456.1 mRNA upstream 307167 39070466 ~ 39235478 (+) True stxbp5a
XM_036985454.1 mRNA upstream 495416 38930994 ~ 39047229 (+) False adgb
XM_036985461.1 mRNA downstream 103044 39645969 ~ 39796219 (+) False LOC110529898
XM_036985459.1 mRNA downstream 144420 39687345 ~ 39796219 (+) False LOC110529898
XM_036985460.1 mRNA downstream 145313 39688238 ~ 39796219 (+) True LOC110529898
XM_021612555.2 mRNA downstream 257539 39800464 ~ 39953509 (+) False usta
XM_021612557.2 mRNA downstream 491007 40033932 ~ 40128526 (+) True LOC110529903
TU802817 other upstream 139349 39402948 ~ 39403296 (+) True G705853
TU802471 other upstream 540767 39000496 ~ 39001878 (+) True adgb
TU802209 other upstream 786340 38755871 ~ 38756305 (+) True G705273
TU801178 other upstream 1312671 38226055 ~ 38229974 (+) True G704281
TU800686 other upstream 1771010 37770864 ~ 37771635 (+) True G703835
TU803252 other downstream 554981 40097906 ~ 40102291 (+) True G706274
TU803205 other downstream 623283 40166208 ~ 40321292 (+) False LOC110530920
TU803204 other downstream 778648 40321573 ~ 40323773 (+) True LOC110530920
TU805103 other downstream 1543773 41086698 ~ 41167970 (+) True G708034
TU805139 other downstream 1737913 41280838 ~ 41281481 (+) True LOC110529918

Expression Profile