RNA id: TU802952


Basic Information

Item Value
RNA id TU802952
length 290
lncRNA type intronic
GC content 0.42
exon number 1
gene id G705986
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 39564764 ~ 39565053 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATTTTAGATGGCTCCGAGTAGCCTTAACTTTTATCCCTCTCAAATGTACTTCAATGTAACGGAACTTGGCTTATAGTAAACACAATAGAGAACAACGCTTAGTTGACCGCTAATTTGATCTGAAACTTTGAGAAATGGGAGAAAAAAAGTGCGCGAAAGAGCAAAGGGAGGAGGATGCAGTTGCTAGCTGAGCACTCACACATTGGAGAAAAAACGCCACCTGACTCCTCGGGAGAAGAAGAAATAGAGGATTCTGGACATTCGGTTGATGCTGAAAATCCATGCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU802946 lncRNA upstream 6999 39557558 ~ 39557765 (+) True G705980
TU802937 lncRNA upstream 18143 39546417 ~ 39546621 (+) True G705971
TU802936 lncRNA upstream 18649 39545817 ~ 39546115 (+) True G705970
TU802933 lncRNA upstream 21839 39542645 ~ 39542925 (+) True G705967
TU802932 lncRNA upstream 22196 39542364 ~ 39542568 (+) True G705966
TU802957 lncRNA downstream 4768 39569821 ~ 39570104 (+) True G705991
TU802972 lncRNA downstream 24433 39589486 ~ 39589685 (+) True G706006
TU802973 lncRNA downstream 24668 39589721 ~ 39590017 (+) True G706007
TU802978 lncRNA downstream 30649 39595702 ~ 39595939 (+) True G706012
TU802981 lncRNA downstream 33284 39598337 ~ 39598596 (+) True G706015
XM_021614216.2 mRNA upstream 304255 39259698 ~ 39260509 (+) True LOC110530918
XR_002474450.2 mRNA upstream 324910 39237065 ~ 39239854 (+) False LOC110529897
XM_036985455.1 mRNA upstream 329286 39070465 ~ 39235478 (+) False stxbp5a
XM_036985456.1 mRNA upstream 329286 39070466 ~ 39235478 (+) True stxbp5a
XM_036985454.1 mRNA upstream 517535 38930994 ~ 39047229 (+) False adgb
XM_036985461.1 mRNA downstream 80916 39645969 ~ 39796219 (+) False LOC110529898
XM_036985459.1 mRNA downstream 122292 39687345 ~ 39796219 (+) False LOC110529898
XM_036985460.1 mRNA downstream 123185 39688238 ~ 39796219 (+) True LOC110529898
XM_021612555.2 mRNA downstream 235411 39800464 ~ 39953509 (+) False usta
XM_021612557.2 mRNA downstream 468879 40033932 ~ 40128526 (+) True LOC110529903
TU802817 other upstream 161468 39402948 ~ 39403296 (+) True G705853
TU802471 other upstream 562886 39000496 ~ 39001878 (+) True adgb
TU802209 other upstream 808459 38755871 ~ 38756305 (+) True G705273
TU801178 other upstream 1334790 38226055 ~ 38229974 (+) True G704281
TU800686 other upstream 1793129 37770864 ~ 37771635 (+) True G703835
TU803252 other downstream 532853 40097906 ~ 40102291 (+) True G706274
TU803205 other downstream 601155 40166208 ~ 40321292 (+) False LOC110530920
TU803204 other downstream 756520 40321573 ~ 40323773 (+) True LOC110530920
TU805103 other downstream 1521645 41086698 ~ 41167970 (+) True G708034
TU805139 other downstream 1715785 41280838 ~ 41281481 (+) True LOC110529918

Expression Profile