RNA id: TCONS_00035648


Basic Information

Item Value
RNA id TCONS_00035648
length 520
RNA type processed_transcript
GC content 0.46
exon number 7
gene id XLOC_018090
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 25639470 ~ 25645150 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTAAGCGATGCTGGAATAGACATCTGTCTGaaaacaatgacctgcaggactGGAAGAGGTCCTGTGCCCATTGACAGTGCAGAGGGAGAACGTGAGCTGGAAGCATTAAAGACTCGAGTTAGAGCAGACTATTCAGTGAGGGAGTTTGAAGACCAGGAAAATGATAAGATGGACATGTCAGGGGTCACCGAGGATGATCTTAACGGCTCTGGTCAACAGGAAGACAGCAAAAATCTATGGCACGGAGCTGAATCATTCCAGCAATCAAAACATCAATAATCTCCCAACTCTCCTCATTGGACAAAGACTGTTTCAGGGACCGCCTACATCCTCCTGTTCCCTCGCCTCACCGTAGCTTCATTGGTGTCTTATCTCCAAATGGGAAAAGCACCTTCAGACCAAGCATTCTGAACATGGAAAGACAAATAAACTCGATAGGAAGTCCAAACAGAAGGTCTTCTGTAATCCACCAAGAGCTTCTTAGATCTCCTTATGGTGCCAAACAGGTGCCATTTTCATC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030804-4 Is expressed in nervous system; pectoral fin musculature; pharyngeal arch 3-7 skeleton; and proliferative region.

Ensembl:

ensembl_id ENSDART00000144230

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035640 lncRNA downstream 37395 25600105 ~ 25605285 (-) True XLOC_018088
TCONS_00035638 lncRNA downstream 91004 25548425 ~ 25551676 (-) False XLOC_018087
TCONS_00036840 lncRNA downstream 230499 25401086 ~ 25412181 (-) True XLOC_018081
TCONS_00036839 lncRNA downstream 331226 25307795 ~ 25311454 (-) True XLOC_018080
TCONS_00036476 lncRNA downstream 910371 24729131 ~ 24732309 (-) True XLOC_018078
TCONS_00036841 lncRNA upstream 21212 25666049 ~ 25669922 (-) False XLOC_018091
TCONS_00035653 lncRNA upstream 65954 25710791 ~ 25712415 (-) True XLOC_018092
TCONS_00036842 lncRNA upstream 417708 26062545 ~ 26070949 (-) True XLOC_018101
TCONS_00036843 lncRNA upstream 801066 26445903 ~ 26458381 (-) True XLOC_018107
TCONS_00036844 lncRNA upstream 835225 26480062 ~ 26523214 (-) False XLOC_018108
TCONS_00035644 mRNA downstream 11424 25618114 ~ 25631256 (-) True XLOC_018089
TCONS_00035643 mRNA downstream 15987 25618114 ~ 25626693 (-) False XLOC_018089
TCONS_00035642 mRNA downstream 16252 25618114 ~ 25626428 (-) False XLOC_018089
TCONS_00035641 mRNA downstream 16482 25618114 ~ 25626198 (-) False XLOC_018089
TCONS_00035637 mRNA downstream 91004 25548425 ~ 25551676 (-) False XLOC_018087
TCONS_00035649 mRNA upstream 15002 25659839 ~ 25709247 (-) False XLOC_018091
TCONS_00035650 mRNA upstream 15117 25659954 ~ 25671342 (-) False XLOC_018091
TCONS_00035652 mRNA upstream 21978 25666815 ~ 25669813 (-) True XLOC_018091
TCONS_00035654 mRNA upstream 95142 25739979 ~ 25748407 (-) True XLOC_018093
TCONS_00035655 mRNA upstream 208175 25853012 ~ 25878607 (-) False XLOC_018094
TCONS_00035639 other downstream 91864 25549425 ~ 25550816 (-) True XLOC_018087
TCONS_00035636 other downstream 101926 25538355 ~ 25540754 (-) True XLOC_018086
TCONS_00035635 other downstream 104263 25537580 ~ 25538417 (-) False XLOC_018086
TCONS_00035626 other downstream 272800 25368510 ~ 25369880 (-) False XLOC_018081
TCONS_00035616 other downstream 1470540 24152799 ~ 24172140 (-) False XLOC_018073
TCONS_00035651 other upstream 21212 25666049 ~ 25709349 (-) False XLOC_018091
TCONS_00035674 other upstream 474502 26119339 ~ 26119459 (-) True XLOC_018102
TCONS_00035675 other upstream 549889 26194726 ~ 26194841 (-) True XLOC_018103
TCONS_00035681 other upstream 745958 26390795 ~ 26391957 (-) True XLOC_018105
TCONS_00035690 other upstream 835591 26480428 ~ 26488945 (-) False XLOC_018108

Expression Profile

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