RNA id: TU802990


Basic Information

Item Value
RNA id TU802990
length 231
lncRNA type intronic
GC content 0.32
exon number 1
gene id G706024
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 39608178 ~ 39608408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTataatttagaaaacaaaacgtttattctttctgtgaaatacggaaccgttctgtattttatctaacgggtggcatccctaagtctaaatattgctgttacataaggtacaattctggcaaattaattacggtctttgttaggaataaatggtctATGGTAAAATCCGTAAACTataatttagaaaacaaaacgtttattctttctgtgaaatacggaaccgttctgtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU802989 lncRNA upstream 309 39607657 ~ 39607869 (+) True G706023
TU802981 lncRNA upstream 9582 39598337 ~ 39598596 (+) True G706015
TU802978 lncRNA upstream 12239 39595702 ~ 39595939 (+) True G706012
TU802973 lncRNA upstream 18161 39589721 ~ 39590017 (+) True G706007
TU802972 lncRNA upstream 18493 39589486 ~ 39589685 (+) True G706006
TU803001 lncRNA downstream 14434 39622842 ~ 39623075 (+) True G706035
TU803005 lncRNA downstream 17906 39626314 ~ 39626516 (+) True G706039
TU803082 lncRNA downstream 143838 39752246 ~ 39752767 (+) True G706108
TU803097 lncRNA downstream 229804 39838212 ~ 39839454 (+) True G706123
TU803125 lncRNA downstream 280786 39889194 ~ 39889442 (+) True G706150
XM_021614216.2 mRNA upstream 347669 39259698 ~ 39260509 (+) True LOC110530918
XR_002474450.2 mRNA upstream 368324 39237065 ~ 39239854 (+) False LOC110529897
XM_036985455.1 mRNA upstream 372700 39070465 ~ 39235478 (+) False stxbp5a
XM_036985456.1 mRNA upstream 372700 39070466 ~ 39235478 (+) True stxbp5a
XM_036985454.1 mRNA upstream 560949 38930994 ~ 39047229 (+) False adgb
XM_036985461.1 mRNA downstream 37561 39645969 ~ 39796219 (+) False LOC110529898
XM_036985459.1 mRNA downstream 78937 39687345 ~ 39796219 (+) False LOC110529898
XM_036985460.1 mRNA downstream 79830 39688238 ~ 39796219 (+) True LOC110529898
XM_021612555.2 mRNA downstream 192056 39800464 ~ 39953509 (+) False usta
XM_021612557.2 mRNA downstream 425524 40033932 ~ 40128526 (+) True LOC110529903
TU802817 other upstream 204882 39402948 ~ 39403296 (+) True G705853
TU802471 other upstream 606300 39000496 ~ 39001878 (+) True adgb
TU802209 other upstream 851873 38755871 ~ 38756305 (+) True G705273
TU801178 other upstream 1378204 38226055 ~ 38229974 (+) True G704281
TU800686 other upstream 1836543 37770864 ~ 37771635 (+) True G703835
TU803252 other downstream 489498 40097906 ~ 40102291 (+) True G706274
TU803205 other downstream 557800 40166208 ~ 40321292 (+) False LOC110530920
TU803204 other downstream 713165 40321573 ~ 40323773 (+) True LOC110530920
TU805103 other downstream 1478290 41086698 ~ 41167970 (+) True G708034
TU805139 other downstream 1672430 41280838 ~ 41281481 (+) True LOC110529918

Expression Profile