RNA id: TU803097


Basic Information

Item Value
RNA id TU803097
length 1091
lncRNA type intronic
GC content 0.46
exon number 2
gene id G706123
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 39838212 ~ 39839454 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCATCTCTATGAACCCCTTGTAGAGGCCAAACAGCTGTGAGTGGAACTGCACTGCTGAGAACCATGAGTTCCAGCGTGTTGCTCATTGGGAGCCATAGATGCTCTCTTCCGTCCTGCCAGTTTGGTGGTGAGGAAGGGAAGGTATCTTCTTTTCAGTGCCCCTGCCTGGTAAAACATCTGCGAAAAACGTAGCATGAATGCATTCAGCTGATCAAAAGTTTTGCAGAAAGCAATCCCTACCAGATTCATGATGGGAACCATGCATGTTATGTGCAGGGAGATGGGGAACAATGACTGAGGTGCAGCTTTGTAGGTTTTCTTCATGTACGCAGCATTGTCTGTGTCAAAGACCATGATGTCATCATTGGTGATATTGTAGTCTTGTAGACATTTCACCACCGCCATGGAAACTGTTGAATGGTCACACTGCTCCAGAAACACTGTCCCTGCGAGGTAGGCATGCATTCTCTCCGAGGTATCCTTTTCAAGTGGTGCGATGAGGATGTTTAGTACACTGCCTCATTGAGGGGTGATCACTTTTGTAAAGGGGCATGTTGACTGCTGTGCAAGTGCGTACCCAATCTTCACAAATCTGAAAAATAACAATTGCACCAATTAATttgatatatataatatatatatccgTGTGTCATaatccactcacacacacctctccatcaGGTTTGGGGCTTGCTATCAACACGAGATgcacctgtcacaccctgatttaTTTCACCCGTCTTgtacttgtctccaccccccaccaggtgtctccctgttttctgtttgtctgttgccagttcgtcttgtcgtCGTGGTTTCCCGTATTCAAGTCTGTCTAGTCTTCCCggttctgagcctgcctgccgttctgtacctcatTGACTCTGCCCTGGACTACTGACCACTCTgcttgccctgaccctGTTGTGATACCACCTCCCATTCctactcaaatcaaatttgatttgtcacatacacatggttagcagatgttatatagtttatagttccgaccatgcagtaattttctctttctctctctctctctctctctctctctctctctctctctctctctctctctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU803082 lncRNA upstream 85445 39752246 ~ 39752767 (+) True G706108
TU803005 lncRNA upstream 211696 39626314 ~ 39626516 (+) True G706039
TU803001 lncRNA upstream 215137 39622842 ~ 39623075 (+) True G706035
TU802990 lncRNA upstream 229804 39608178 ~ 39608408 (+) True G706024
TU802989 lncRNA upstream 230343 39607657 ~ 39607869 (+) True G706023
TU803125 lncRNA downstream 49740 39889194 ~ 39889442 (+) True G706150
TU803129 lncRNA downstream 63391 39902845 ~ 39903005 (+) True G706154
TU803131 lncRNA downstream 72109 39911563 ~ 39912043 (+) True G706156
TU803145 lncRNA downstream 94254 39933708 ~ 39999518 (+) True G706169
TU803109 lncRNA downstream 113002 39952456 ~ 39953509 (+) True usta
XM_036985458.1 mRNA upstream 41993 39463325 ~ 39796219 (+) False LOC110529898
XM_036985457.1 mRNA upstream 41993 39463326 ~ 39796219 (+) False LOC110529898
XM_036985461.1 mRNA upstream 41993 39645969 ~ 39796219 (+) False LOC110529898
XM_036985459.1 mRNA upstream 41993 39687345 ~ 39796219 (+) False LOC110529898
XM_036985460.1 mRNA upstream 41993 39688238 ~ 39796219 (+) True LOC110529898
XM_021612557.2 mRNA downstream 194478 40033932 ~ 40128526 (+) True LOC110529903
XM_036985467.1 mRNA downstream 326720 40166174 ~ 40323818 (+) False LOC110530920
XM_036985465.1 mRNA downstream 326722 40166176 ~ 40323818 (+) False LOC110530920
XM_036985468.1 mRNA downstream 326723 40166177 ~ 40323818 (+) False LOC110530920
XM_036985469.1 mRNA downstream 326723 40166177 ~ 40323818 (+) False LOC110530920
TU802817 other upstream 434916 39402948 ~ 39403296 (+) True G705853
TU802471 other upstream 836334 39000496 ~ 39001878 (+) True adgb
TU802209 other upstream 1081907 38755871 ~ 38756305 (+) True G705273
TU801178 other upstream 1608238 38226055 ~ 38229974 (+) True G704281
TU800686 other upstream 2066577 37770864 ~ 37771635 (+) True G703835
TU803252 other downstream 258452 40097906 ~ 40102291 (+) True G706274
TU803205 other downstream 326754 40166208 ~ 40321292 (+) False LOC110530920
TU803204 other downstream 482119 40321573 ~ 40323773 (+) True LOC110530920
TU805103 other downstream 1247244 41086698 ~ 41167970 (+) True G708034
TU805139 other downstream 1441384 41280838 ~ 41281481 (+) True LOC110529918

Expression Profile