RNA id: TU803131


Basic Information

Item Value
RNA id TU803131
length 481
lncRNA type intronic
GC content 0.37
exon number 1
gene id G706156
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 39911563 ~ 39912043 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttgaaatacagctgaagtaacatagctagctaactatttaactgtatgcctatggatgtgtagctagctacagtatgtagccgatctatgtatggaccctaaaacgttaggttctgaactaatattcataccaatctatgaacctcggctatcatagttgttgtatcaacttcaagtctgaatggcattaatgaagcctatggatagagtagaatataataactttattgtgccaaggatgcaagtcctatatacagtagttattaccatgcatgagattcccacattgtagcctgtacatgtACTCTTCCTTAGCAACTAAAGGTGCGGTTCAGGTGTGAATCTCTGagacattatttttcagtcatatcaaactccattatttgaatgatgctgtgtctgcatgtatgtattgcaattatacacttcaacagtgtttaccactcctgttcctgggacatcaatgattacacattgtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU803129 lncRNA upstream 8558 39902845 ~ 39903005 (+) True G706154
TU803125 lncRNA upstream 22121 39889194 ~ 39889442 (+) True G706150
TU803097 lncRNA upstream 72109 39838212 ~ 39839454 (+) True G706123
TU803082 lncRNA upstream 158796 39752246 ~ 39752767 (+) True G706108
TU803005 lncRNA upstream 285047 39626314 ~ 39626516 (+) True G706039
TU803145 lncRNA downstream 21665 39933708 ~ 39999518 (+) True G706169
TU803109 lncRNA downstream 40413 39952456 ~ 39953509 (+) True usta
TU803193 lncRNA downstream 110522 40022565 ~ 40022772 (+) True G706217
TU803196 lncRNA downstream 114188 40026231 ~ 40026492 (+) True G706220
TU803203 lncRNA downstream 119891 40031934 ~ 40032216 (+) True G706227
XM_036985458.1 mRNA upstream 115344 39463325 ~ 39796219 (+) False LOC110529898
XM_021612557.2 mRNA downstream 121889 40033932 ~ 40128526 (+) True LOC110529903
XM_036985467.1 mRNA downstream 254131 40166174 ~ 40323818 (+) False LOC110530920
XM_036985465.1 mRNA downstream 254133 40166176 ~ 40323818 (+) False LOC110530920
XM_036985468.1 mRNA downstream 254134 40166177 ~ 40323818 (+) False LOC110530920
XM_036985469.1 mRNA downstream 254134 40166177 ~ 40323818 (+) False LOC110530920
TU802817 other upstream 508267 39402948 ~ 39403296 (+) True G705853
TU802471 other upstream 909685 39000496 ~ 39001878 (+) True adgb
TU802209 other upstream 1155258 38755871 ~ 38756305 (+) True G705273
TU801178 other upstream 1681589 38226055 ~ 38229974 (+) True G704281
TU800686 other upstream 2139928 37770864 ~ 37771635 (+) True G703835
TU803252 other downstream 185863 40097906 ~ 40102291 (+) True G706274
TU803205 other downstream 254165 40166208 ~ 40321292 (+) False LOC110530920
TU803204 other downstream 409530 40321573 ~ 40323773 (+) True LOC110530920
TU805103 other downstream 1174655 41086698 ~ 41167970 (+) True G708034
TU805139 other downstream 1368795 41280838 ~ 41281481 (+) True LOC110529918

Expression Profile