RNA id: TU803145


Basic Information

Item Value
RNA id TU803145
length 285
lncRNA type read_through
GC content 0.41
exon number 2
gene id G706169
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 39933708 ~ 39999518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttcatgttacacaatacatgtatgttttgtttgataaagttcatatttatataaatctcagtatacattggtgcgttacgttcactagttccaaaaacatcctgtgatattgcagagagccacatcattttacagaaatactcattataaatgtcgataaatgccggggcggcagggtacccTAGTGGTTGGGCTAgtagcgttgggctagtaaccggaaggttgcaagttcaaactcccgagctgacaaggtacaaatctgtcattctgcccctgaacaggca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU803131 lncRNA upstream 21665 39911563 ~ 39912043 (+) True G706156
TU803129 lncRNA upstream 30703 39902845 ~ 39903005 (+) True G706154
TU803125 lncRNA upstream 44266 39889194 ~ 39889442 (+) True G706150
TU803097 lncRNA upstream 94254 39838212 ~ 39839454 (+) True G706123
TU803082 lncRNA upstream 180941 39752246 ~ 39752767 (+) True G706108
TU803193 lncRNA downstream 23047 40022565 ~ 40022772 (+) True G706217
TU803196 lncRNA downstream 26713 40026231 ~ 40026492 (+) True G706220
TU803203 lncRNA downstream 32416 40031934 ~ 40032216 (+) True G706227
TU803425 lncRNA downstream 337190 40336708 ~ 40336919 (+) True G706441
TU803427 lncRNA downstream 343375 40342893 ~ 40343101 (+) True G706443
XM_036985458.1 mRNA upstream 137489 39463325 ~ 39796219 (+) False LOC110529898
XM_021612557.2 mRNA downstream 34414 40033932 ~ 40128526 (+) True LOC110529903
XM_036985467.1 mRNA downstream 166656 40166174 ~ 40323818 (+) False LOC110530920
XM_036985465.1 mRNA downstream 166658 40166176 ~ 40323818 (+) False LOC110530920
XM_036985468.1 mRNA downstream 166659 40166177 ~ 40323818 (+) False LOC110530920
XM_036985469.1 mRNA downstream 166659 40166177 ~ 40323818 (+) False LOC110530920
TU802817 other upstream 530412 39402948 ~ 39403296 (+) True G705853
TU802471 other upstream 931830 39000496 ~ 39001878 (+) True adgb
TU802209 other upstream 1177403 38755871 ~ 38756305 (+) True G705273
TU801178 other upstream 1703734 38226055 ~ 38229974 (+) True G704281
TU800686 other upstream 2162073 37770864 ~ 37771635 (+) True G703835
TU803252 other downstream 98388 40097906 ~ 40102291 (+) True G706274
TU803205 other downstream 166690 40166208 ~ 40321292 (+) False LOC110530920
TU803204 other downstream 322055 40321573 ~ 40323773 (+) True LOC110530920
TU805103 other downstream 1087180 41086698 ~ 41167970 (+) True G708034
TU805139 other downstream 1281320 41280838 ~ 41281481 (+) True LOC110529918

Expression Profile