RNA id: TU803196


Basic Information

Item Value
RNA id TU803196
length 262
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G706220
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 40026231 ~ 40026492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGAGAAGTGAAACACGGCAGAAACAGACCTAATCAAATCTGATTCATTGAAAGTACTTTTATTTGTACAGATTTTTTTCCAATCGCTTTGTGCAATTTTCACAAGTATATGGTACATTTTCACAATGcttagtacaaaactcaaaacatAATCAAAAAGGCAGTTGTTGCAAAActctaagcacattttcaattgacaaCACACAAAATCATACAGTGACTTTTTCACCATTTAGAAATACGTTTCACATTGCAATACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU803193 lncRNA upstream 3459 40022565 ~ 40022772 (+) True G706217
TU803145 lncRNA upstream 26713 39933708 ~ 39999518 (+) True G706169
TU803109 lncRNA upstream 72722 39952456 ~ 39953509 (+) True usta
TU803131 lncRNA upstream 114188 39911563 ~ 39912043 (+) True G706156
TU803129 lncRNA upstream 123226 39902845 ~ 39903005 (+) True G706154
TU803203 lncRNA downstream 5442 40031934 ~ 40032216 (+) True G706227
TU803425 lncRNA downstream 310216 40336708 ~ 40336919 (+) True G706441
TU803427 lncRNA downstream 316401 40342893 ~ 40343101 (+) True G706443
TU803432 lncRNA downstream 321776 40348268 ~ 40348486 (+) True G706448
TU803436 lncRNA downstream 326773 40353265 ~ 40353500 (+) True G706452
XM_021612555.2 mRNA upstream 72722 39800464 ~ 39953509 (+) False usta
XM_036985457.1 mRNA upstream 230012 39463326 ~ 39796219 (+) False LOC110529898
XM_021612557.2 mRNA downstream 7440 40033932 ~ 40128526 (+) True LOC110529903
XM_036985467.1 mRNA downstream 139682 40166174 ~ 40323818 (+) False LOC110530920
XM_036985465.1 mRNA downstream 139684 40166176 ~ 40323818 (+) False LOC110530920
XM_036985468.1 mRNA downstream 139685 40166177 ~ 40323818 (+) False LOC110530920
XM_036985469.1 mRNA downstream 139685 40166177 ~ 40323818 (+) False LOC110530920
TU802817 other upstream 622935 39402948 ~ 39403296 (+) True G705853
TU802471 other upstream 1024353 39000496 ~ 39001878 (+) True adgb
TU802209 other upstream 1269926 38755871 ~ 38756305 (+) True G705273
TU801178 other upstream 1796257 38226055 ~ 38229974 (+) True G704281
TU800686 other upstream 2254596 37770864 ~ 37771635 (+) True G703835
TU803252 other downstream 71414 40097906 ~ 40102291 (+) True G706274
TU803205 other downstream 139716 40166208 ~ 40321292 (+) False LOC110530920
TU803204 other downstream 295081 40321573 ~ 40323773 (+) True LOC110530920
TU805103 other downstream 1060206 41086698 ~ 41167970 (+) True G708034
TU805139 other downstream 1254346 41280838 ~ 41281481 (+) True LOC110529918

Expression Profile