RNA id: TU803252


Basic Information

Item Value
RNA id TU803252
length 339
RNA type TUCP
GC content 0.44
exon number 2
gene id G706274
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 40097906 ~ 40102291 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtaaaagcaacacagctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagtagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacggagatttgccttccaacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU803203 lncRNA upstream 65690 40031934 ~ 40032216 (+) True G706227
TU803196 lncRNA upstream 71414 40026231 ~ 40026492 (+) True G706220
TU803193 lncRNA upstream 75134 40022565 ~ 40022772 (+) True G706217
TU803145 lncRNA upstream 98388 39933708 ~ 39999518 (+) True G706169
TU803109 lncRNA upstream 144397 39952456 ~ 39953509 (+) True usta
TU803425 lncRNA downstream 234417 40336708 ~ 40336919 (+) True G706441
TU803427 lncRNA downstream 240602 40342893 ~ 40343101 (+) True G706443
TU803432 lncRNA downstream 245977 40348268 ~ 40348486 (+) True G706448
TU803436 lncRNA downstream 250974 40353265 ~ 40353500 (+) True G706452
TU803456 lncRNA downstream 324124 40426415 ~ 40426652 (+) True G706471
XM_021612555.2 mRNA upstream 144397 39800464 ~ 39953509 (+) False usta
XM_036985458.1 mRNA upstream 301687 39463325 ~ 39796219 (+) False LOC110529898
XM_036985457.1 mRNA upstream 301687 39463326 ~ 39796219 (+) False LOC110529898
XM_036985461.1 mRNA upstream 301687 39645969 ~ 39796219 (+) False LOC110529898
XM_036985459.1 mRNA upstream 301687 39687345 ~ 39796219 (+) False LOC110529898
XM_036985467.1 mRNA downstream 63883 40166174 ~ 40323818 (+) False LOC110530920
XM_036985465.1 mRNA downstream 63885 40166176 ~ 40323818 (+) False LOC110530920
XM_036985468.1 mRNA downstream 63886 40166177 ~ 40323818 (+) False LOC110530920
XM_036985469.1 mRNA downstream 63886 40166177 ~ 40323818 (+) False LOC110530920
XM_036985466.1 mRNA downstream 66216 40168507 ~ 40323818 (+) False LOC110530920
TU802817 other upstream 694610 39402948 ~ 39403296 (+) True G705853
TU802471 other upstream 1096028 39000496 ~ 39001878 (+) True adgb
TU802209 other upstream 1341601 38755871 ~ 38756305 (+) True G705273
TU801178 other upstream 1867932 38226055 ~ 38229974 (+) True G704281
TU800686 other upstream 2326271 37770864 ~ 37771635 (+) True G703835
TU803205 other downstream 63917 40166208 ~ 40321292 (+) False LOC110530920
TU803204 other downstream 219282 40321573 ~ 40323773 (+) True LOC110530920
TU805103 other downstream 984407 41086698 ~ 41167970 (+) True G708034
TU805139 other downstream 1178547 41280838 ~ 41281481 (+) True LOC110529918
TU805563 other downstream 1277734 41380025 ~ 41384183 (+) True G708448

Expression Profile