RNA id: TU803432


Basic Information

Item Value
RNA id TU803432
length 219
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G706448
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 40348268 ~ 40348486 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATATTCCTGGTAGTCATCCACCATGTTGCTTTCTGTTTTCAGACCAGTAAAGATGAAAgagaagagacaaggagagatagactttatttgtactattgaGATgctccagtggtggaaaaagtacccaattgtcatactagagtaaaagtaaagataccttaatagaaaatgactcaagtaaaagtgaaagtcacccagtaaagcactacttgagtaa

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU803427 lncRNA upstream 5167 40342893 ~ 40343101 (+) True G706443
TU803425 lncRNA upstream 11349 40336708 ~ 40336919 (+) True G706441
TU803203 lncRNA upstream 316052 40031934 ~ 40032216 (+) True G706227
TU803196 lncRNA upstream 321776 40026231 ~ 40026492 (+) True G706220
TU803193 lncRNA upstream 325496 40022565 ~ 40022772 (+) True G706217
TU803436 lncRNA downstream 4779 40353265 ~ 40353500 (+) True G706452
TU803456 lncRNA downstream 77929 40426415 ~ 40426652 (+) True G706471
TU803457 lncRNA downstream 78726 40427212 ~ 40427587 (+) True G706472
TU804468 lncRNA downstream 119993 40468479 ~ 40468684 (+) True G707444
TU804477 lncRNA downstream 130652 40479138 ~ 40479354 (+) True G707453
XM_036985467.1 mRNA upstream 24450 40166174 ~ 40323818 (+) False LOC110530920
XM_021612561.2 mRNA downstream 72813 40421299 ~ 40424106 (+) True LOC110529908
XM_021612567.2 mRNA downstream 149554 40498040 ~ 40516785 (+) False cd164
XM_021612569.2 mRNA downstream 149554 40498040 ~ 40516785 (+) False cd164
XR_005052875.1 mRNA downstream 149554 40498040 ~ 40516785 (+) False cd164
XM_021612566.2 mRNA downstream 149555 40498041 ~ 40516785 (+) False cd164
TU803204 other upstream 24495 40321573 ~ 40323773 (+) True LOC110530920
TU803205 other upstream 26976 40166208 ~ 40321292 (+) False LOC110530920
TU803252 other upstream 245977 40097906 ~ 40102291 (+) True G706274
TU802817 other upstream 944972 39402948 ~ 39403296 (+) True G705853
TU802471 other upstream 1346390 39000496 ~ 39001878 (+) True adgb
TU805103 other downstream 738212 41086698 ~ 41167970 (+) True G708034
TU805139 other downstream 932352 41280838 ~ 41281481 (+) True LOC110529918
TU805563 other downstream 1031539 41380025 ~ 41384183 (+) True G708448
TU806817 other downstream 2848074 43196560 ~ 43197642 (+) True G709490
TU808451 other downstream 4100098 44448584 ~ 44448973 (+) True G711021

Expression Profile