RNA id: TCONS_00035653



Basic Information


Item Value
RNA id TCONS_00035653
length 1280
lncRNA type antisense
GC content 0.39
exon number 2
gene id XLOC_018092
representative True

Chromosome Information


Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 25710791 ~ 25712415 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GAAGAGTTTCTCCACCAGTGGCAGACTCTCGATGGCCAGCGGCTGCCTGTAGCCCAGCTGATCCAAGCGCTTCCGCAGATTGATGAACTTCCGCTCTGCGTTGGTCGTCATGGTCATTCAACACAAATACGCGCTCCGCTCTACAAGCAAAGTGATTCACATGTCAACAACAGATTTAACAAAGACCTTTTACATCTTCTTATCTTATACTTTCATCGTTTGCCGTGTATTGAAACCTATGCGCTGCCAAATCAGACAGCACTTTTGGACGCATTGGCAACATTCTATTTCCTCCCCTCCCCGCGGTGAATGGTCTTCCGGTGGCGGTAACACTGCTTGAAAATGGCGCCGAGGAGAAAGGAAAGACCACAGTCCTGCTCAAGTGCCGTCAAACTGGAACCTGAGAAACAGCGACATTTAGTGGACGTTGAGTAGTAAACGGTATAAAAAAAGTGATCACAACTGCTTTTACTCATGTAAATTCAGTGCAATTATAATTGAACATGTAAAGTCAGACCTTTCCCCATGGGAACAGTGTATTGAACCTTTAGACAAAAACTCAATCCTCTTATGTGCTttgcatcatttttaataaatcaggTGCTTTGCCCATTTAGCACGATTGCCTATTTTTTAGCAAACTATTGGaggaaaaacacacattttatttaGGAGCACAAACTGAACAAATATAACGTTATACTTTCATGCATTTGTTTATCATACATGTTTATGTTTACAGATTACATAAATAATTGCATATAAATATCTGTTACAATCACTCTATCATCTTCCAACAATATTATCAATACATAATATATGATGAGgctacatggtggctcagtagttagcactgtcgccttatagCCAGAaagttgctagttcgagtcccgactgggtcagttggcaactctgtgtggagtttgcatgttctccccatgttagcttaggtttcctcctggtgctccggttttccccacagtccaaatagacaattttgaggaatgtaaacaaaaacaatggccccaatttatttcctgttttacatttttaatttatagaGCTTCCGAGAacccaaaaagagccacatattgataaattatgttatgatagctgttttaacattacattatgattaaattgccttttACAGTTCGGAAATAATTTGCTAACCAGCAGGAAAATTTCATGGGCCAAAGACATCactacattgaaatggtctatagatgaattgaatgaactaaatttgccaaatagcgtatgagtgtgaataaatgtga

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000156084

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00036841 lncRNA downstream 40869 25666049 ~ 25669922 (-) False XLOC_018091
TCONS_00035640 lncRNA downstream 105506 25600105 ~ 25605285 (-) True XLOC_018088
TCONS_00035638 lncRNA downstream 159115 25548425 ~ 25551676 (-) False XLOC_018087
TCONS_00036840 lncRNA downstream 298610 25401086 ~ 25412181 (-) True XLOC_018081
TCONS_00036839 lncRNA downstream 399337 25307795 ~ 25311454 (-) True XLOC_018080
TCONS_00036842 lncRNA upstream 350130 26062545 ~ 26070949 (-) True XLOC_018101
TCONS_00036843 lncRNA upstream 733488 26445903 ~ 26458381 (-) True XLOC_018107
TCONS_00036844 lncRNA upstream 767647 26480062 ~ 26523214 (-) False XLOC_018108
TCONS_00035696 lncRNA upstream 831835 26544250 ~ 26550760 (-) False XLOC_018110
TCONS_00035697 lncRNA upstream 835822 26548237 ~ 26550803 (-) False XLOC_018110
TCONS_00035649 mRNA downstream 1544 25659839 ~ 25709247 (-) False XLOC_018091
TCONS_00035650 mRNA downstream 39449 25659954 ~ 25671342 (-) False XLOC_018091
TCONS_00035652 mRNA downstream 40978 25666815 ~ 25669813 (-) True XLOC_018091
TCONS_00035645 mRNA downstream 65641 25639470 ~ 25645150 (-) False XLOC_018090
TCONS_00035647 mRNA downstream 66660 25642133 ~ 25644131 (-) False XLOC_018090
TCONS_00035654 mRNA upstream 27564 25739979 ~ 25748407 (-) True XLOC_018093
TCONS_00035655 mRNA upstream 140597 25853012 ~ 25878607 (-) False XLOC_018094
TCONS_00035657 mRNA upstream 140982 25853397 ~ 25877793 (-) False XLOC_018094
TCONS_00035656 mRNA upstream 140982 25853397 ~ 25877793 (-) False XLOC_018094
TCONS_00035658 mRNA upstream 154161 25866576 ~ 25870630 (-) False XLOC_018094
TCONS_00035651 other downstream 1442 25666049 ~ 25709349 (-) False XLOC_018091
TCONS_00035648 other downstream 65954 25642680 ~ 25644837 (-) True XLOC_018090
TCONS_00035639 other downstream 159975 25549425 ~ 25550816 (-) True XLOC_018087
TCONS_00035636 other downstream 170037 25538355 ~ 25540754 (-) True XLOC_018086
TCONS_00035635 other downstream 172374 25537580 ~ 25538417 (-) False XLOC_018086
TCONS_00035674 other upstream 406924 26119339 ~ 26119459 (-) True XLOC_018102
TCONS_00035675 other upstream 482311 26194726 ~ 26194841 (-) True XLOC_018103
TCONS_00035681 other upstream 678380 26390795 ~ 26391957 (-) True XLOC_018105
TCONS_00035690 other upstream 768013 26480428 ~ 26488945 (-) False XLOC_018108
TCONS_00035691 other upstream 790071 26502486 ~ 26511273 (-) False XLOC_018108

Expression Profile


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