RNA id: TCONS_00035657


Basic Information

Item Value
RNA id TCONS_00035657
length 2642
RNA type mRNA
GC content 0.48
exon number 17
gene id XLOC_018094
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 25853012 ~ 25878607 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACTAATCATGACTGCCATTAAACACGCCCTTCAGAGGGATATTTTCACTCCCAATGATGAGCGCCTGTTGAGCATCGTCAATGTTTGTAAAGcagggaagaagaagaagaattgttttcTATGTGCCACCGtGACTACAGAGCGTCCAGTGCAGGTGAAGGTGGTCAAAGTGAAGAAGTCGGATAAAGGAGATTTCTATAAGAGACAGATGGCATGGGAACTACGAGACCTGACAGAGGTTGATGCTAAAGATGCCAATAAGGAAAACCCAGAGTTTGACCTGCATTTTGAGAAGGTTTATCGTTGGGTGGCAAGCAGTACAGCAGAGAAGAATTCCTTCATCTCGTGTATTTGGAAGCTGAACCAGCGTTACCTTCGCAAGAAAGTGGAGTTTGTAAACGTCAGCCCTCAGCTGCTAGAAGAGTCGGTTCCGAGTGGCGAGAGTCAGAGTGTTGCTGGTGGAGATGAAGACGCTCTGGATGACTATCAGGAGCTGAATGCCCGTGAGGAGCAGGACATTGAGGGCATGATGGAGGTCTGTGAATACGCCATTTCCAACGCTGAGGCCTTCGCAGAGAAACTGTCTCGTGAGCTTCAGGTCCTAGATGGGGCTAACATCCAGTCCATCATGGCGTCTGAAAAGCAGGTGAACACCCTGATGCAGCTGCTGGACCAGGCTCTGGCGGAGGTGGACACCATCGAGGGGAAGCTGCTCAGTTATGAGGAGATGCTGCAGAGCGTGAAGGAGCAGATGGACCAGATCTCACAGAGCAACCGTCTCATCCAAATCAGCAACACTAACAATGGCAAACTGTTGGATGAGATACAGTTTCTAGTGAACTACATGGATCTTTCAAAAGGGCACATTAAGGCTTTGCAAGAAGGAGATTTGTCCTCTCCTAAGGGTATCGAGGCCTGTATCAACGCTTCTGAGGCTCTTTCACAGTGCATGAATGTTGCTCTCAAACCAGGACACGATAAGCTGATGGCGATCAAGCAACAGCAGCATCTGTTTTCAGAGCTCAGAGATACTTTTGCCCGTCGTCTCACCAACCACCTCAACAATGTGTTTGTGCACCAGggccATGATCAGAGCTCCACACTTGCCCAGCACACCGCTGAGCTGACACTGCCCAAACACAGCCCTCTGCACAGAGACCTGCTGCGATACGCAAAACTCATGGAGTGGCTGAAGAATACACAGAGAGAGAAATATGAGGGTCTCTCCAGGacttatatGGATTACATGACCCGGCTGTATGAGCGCGAAATCAAGGACTTTTTTGAAGTGGCAAAGATCAAAATGGCGGGCACTAGTAAGGATGGGAAAGGAAAGTTTGGTCTCCATGGCAGCTCAGGAAAGCTCACAGGCTCCACCTCAAGCCTAAATAAACTTGCGGTAAGCAGCTCCAACAGCAGACGCTCTCAGTCGTCTTCTCTTCTTGATATGGGCAACATGTCAGCCTCTGACCTGGACGTAGCGGACAGGACCAGGTTTGATAAGATCTTTGAGCAAGTTTTGAGTGAACTGGAGCCGTTGTGTCTGGCTGAACAAGACTTTATTAGCAAGTTCTTCAAGCTGCAGCAAATTCCTACACTAGCTCAGGGAGAGAACATGGATGATTCTGATGGACTGATGCACTCCAAACCGGTCAGTGAACACAGACATTCAATATCTGAGAAGGACATGGTTCGGATGATGATGAATAAGATATTTCAGAGTATTGAGACGGAGCTGAACAGTCTTATAGCTTTAGGTGATAAAATAGACAGCTTTAACTCTCTCTACATGCTGGTGAAGATGAGTCACCACGTCTGGACAGCAGAAAATGTGGATCCCGCCTCATATCTCAGCACAACCCTGGGCAACGTGTTGGTCACCGTCAAGAGAAACTTTGATAAATGCATTTCAGCCCAGATTCGTCAGATGGAAGAGGTGAAGATTTCTAAAAAGAGTAAAGTGGGCATCCTGCCGTTTGTTACTGGTTTTGAGGAGTTCGCAAAGCTGGCTGAGGCTATTTTCCGGAACGCAGAGCGACGAGGGGATCTAGACAAGGCCTACATCAAACTGATGAGAGCTGTGTTTAATAACGtGGAGAAAGTGGCCAATGAGAGCCAGAAGACTCCACGCGATGTGGTGATGATGGAGAACTTTCACCACATCTTCTCAACACTGTCCAGCCTCAAGATCTCCTGTCTGGAGGCAGAGAGAAAGGAGGCCAAGCAGAAATACACCGAACACCTGCAGTCCTACGTCATCAACTCACTTGGTCAACCGCTAGAGAAACTCAATCATTTCTTTGAGGGTGTAGAGGCGCGTGTTGCTCAGGGTGTGCGTGAGGAGGAAGTGAGCTACCAGCTGGCTTTCAATAAGCAGGAACTGCGAAAGGTTATTAAAGAATATCCTGGAAAGGAGGTGAAAAAGGGCCTGGATAATCTCTACAGGAAAGTGGACAAGCACCTGTGCGATGAGGAGAGCCTGTTACAGGTTGTTTGGCACTCCATGCAGGATGAGTTCATTCGCCAGTACAAGCATTTTGAGGGCCTAATAAATCGCTGCTATCCAGGGTCTGGAATCACCATGGAGTTCACCATTCAAGACATGCTGGAGTACTTCTCCAGCATTGCTCAGTCCCATTAA

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0006893 Golgi to plasma membrane transport biological_process
GO:0051601 exocyst localization biological_process
GO:0000145 exocyst cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-1057 Predicted to enable phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in Golgi to plasma membrane transport and exocytosis. Predicted to be part of exocyst. Predicted to be active in plasma membrane. Orthologous to human EXOC1 (exocyst complex component 1).

Ensembl:

ensembl_id ENSDART00000184619

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035653 lncRNA downstream 140982 25710791 ~ 25712415 (-) True XLOC_018092
TCONS_00036841 lncRNA downstream 183475 25666049 ~ 25669922 (-) False XLOC_018091
TCONS_00035640 lncRNA downstream 248112 25600105 ~ 25605285 (-) True XLOC_018088
TCONS_00035638 lncRNA downstream 301721 25548425 ~ 25551676 (-) False XLOC_018087
TCONS_00036840 lncRNA downstream 441216 25401086 ~ 25412181 (-) True XLOC_018081
TCONS_00036842 lncRNA upstream 184752 26062545 ~ 26070949 (-) True XLOC_018101
TCONS_00036843 lncRNA upstream 568110 26445903 ~ 26458381 (-) True XLOC_018107
TCONS_00036844 lncRNA upstream 602269 26480062 ~ 26523214 (-) False XLOC_018108
TCONS_00035696 lncRNA upstream 666457 26544250 ~ 26550760 (-) False XLOC_018110
TCONS_00035697 lncRNA upstream 670444 26548237 ~ 26550803 (-) False XLOC_018110
TCONS_00035654 mRNA downstream 104990 25739979 ~ 25748407 (-) True XLOC_018093
TCONS_00035649 mRNA downstream 144150 25659839 ~ 25709247 (-) False XLOC_018091
TCONS_00035650 mRNA downstream 182055 25659954 ~ 25671342 (-) False XLOC_018091
TCONS_00035652 mRNA downstream 183584 25666815 ~ 25669813 (-) True XLOC_018091
TCONS_00035647 mRNA downstream 209266 25642133 ~ 25644131 (-) False XLOC_018090
TCONS_00035660 mRNA upstream 8698 25886491 ~ 25902141 (-) False XLOC_018095
TCONS_00035661 mRNA upstream 8987 25886780 ~ 25902141 (-) True XLOC_018095
TCONS_00035662 mRNA upstream 51647 25929440 ~ 25934439 (-) True XLOC_018096
TCONS_00035663 mRNA upstream 77325 25955118 ~ 26001290 (-) False XLOC_018097
TCONS_00035664 mRNA upstream 77768 25955561 ~ 26001288 (-) True XLOC_018097
TCONS_00035651 other downstream 144048 25666049 ~ 25709349 (-) False XLOC_018091
TCONS_00035648 other downstream 208560 25642680 ~ 25644837 (-) True XLOC_018090
TCONS_00035639 other downstream 302581 25549425 ~ 25550816 (-) True XLOC_018087
TCONS_00035636 other downstream 312643 25538355 ~ 25540754 (-) True XLOC_018086
TCONS_00035635 other downstream 314980 25537580 ~ 25538417 (-) False XLOC_018086
TCONS_00035674 other upstream 241546 26119339 ~ 26119459 (-) True XLOC_018102
TCONS_00035675 other upstream 316933 26194726 ~ 26194841 (-) True XLOC_018103
TCONS_00035681 other upstream 513002 26390795 ~ 26391957 (-) True XLOC_018105
TCONS_00035690 other upstream 602635 26480428 ~ 26488945 (-) False XLOC_018108
TCONS_00035691 other upstream 624693 26502486 ~ 26511273 (-) False XLOC_018108

Expression Profile

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