RNA id: TU805587


Basic Information

Item Value
RNA id TU805587
length 1408
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G708462
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 41411754 ~ 41488746 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggacaacccttcagttcactactgtacctatcaattatccagtagtagtgattatggttcctcaatatacatttaacatattaccgcttaggctatgtgttacagcactacttttggtgttttttcaggaattgctcttgagaaaatgtcatgtaattgtccccttcaaagttgatatcagattttagcccctgctagggcagatggcacacagacagcagaactggggacagatatgcagggacagactggcagagacagggagtctcaggtaagtttgttgcaccccatatacagtcagtgtacagtaccattgccacctactgtccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctggttgtatgtagcacatatacctgcacacatactggactgaaaaggaacactgctttaactattattagtagtagtattataatgatttgaacaagttgggacaacccttcagttaactactgtacctatcaattatccagtagtagtgattatggttcctcaatatacatttaacatatttcagcactacttttggtgttttttcaggaattgctcttgagaaaatgtcatgtaattgtccccttcaaagttgatatccgattttagcccctgctagggcagatggcacacagacagcagaactggggacagatatgcagggacagactggtagagacagggagtctcaggtaactttgttgcaccccatatacagtcagtgtacagtaccattgccacctacatgtactacaaccagcaataccaagaaaggctggttgtatgtagcacatatacctgcacacatactggactgataaggaacactgctttaactattattagtagtagtattataatgatttgaacaagttgggacaacccttcagttaactactgtacctatcaattatccagtagtagtgattatggttcctcaatatacatttaacatattaccgcttaggctatgtgttacagcactacttttggtgttttttcaggaattgctcttgagaaaatgtaaagtaattgtcccttctaagttgatatcagattttagcccatgctagggcagatggcacacagacagcagaactggggacagatatgcagggacagactggcagagacagggagtctcaggtaagtttgttgcaccccatatacagtcagtgtacagtaccattgccacttactgtccagtatgtatgcaggtatatgtactataaccagcaataccaagaaaggctggttgtaagcacatatacctgcacacatactggactgataaggaacactgctttaactattattagtagtagtattataatgatttgaacaagttgggacaacccttcagttaacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU805594 lncRNA upstream 6417 41403569 ~ 41405337 (+) True G708466
TU805590 lncRNA upstream 8212 41395825 ~ 41403542 (+) True G708464
TU805583 lncRNA upstream 18329 41392812 ~ 41393425 (+) True G708459
TU805581 lncRNA upstream 19381 41392022 ~ 41392373 (+) True G708457
TU805580 lncRNA upstream 24677 41386842 ~ 41387077 (+) True G708456
TU805627 lncRNA downstream 32737 41521483 ~ 41552328 (+) True G708486
TU805663 lncRNA downstream 48425 41537171 ~ 41546180 (+) True G708520
TU805644 lncRNA downstream 64903 41553649 ~ 41554942 (+) True G708502
TU805635 lncRNA downstream 72528 41561274 ~ 41563000 (+) True G708493
TU805623 lncRNA downstream 117838 41606584 ~ 41637272 (+) False G708485
XM_021612580.2 mRNA upstream 128035 41160943 ~ 41283719 (+) False LOC110529918
XM_021612578.2 mRNA upstream 354892 41052163 ~ 41056862 (+) False LOC110529917
XM_021612579.2 mRNA upstream 354892 41052516 ~ 41056862 (+) True LOC110529917
XM_021612574.2 mRNA upstream 456361 40912947 ~ 40955393 (+) False LOC110529915
XR_005053022.1 mRNA downstream 477169 41965915 ~ 41972820 (+) True LOC118965612
XM_021612586.2 mRNA downstream 1046515 42535261 ~ 42549691 (+) False tmub1
XM_021612587.2 mRNA downstream 1046659 42535405 ~ 42549691 (+) True tmub1
XM_036986870.1 mRNA downstream 1083713 42572459 ~ 42606605 (+) True LOC110530921
XM_021612588.2 mRNA downstream 1157514 42646260 ~ 42699086 (+) True fam49ba
TU805563 other upstream 27571 41380025 ~ 41384183 (+) True G708448
TU805139 other upstream 130273 41280838 ~ 41281481 (+) True LOC110529918
TU805103 other upstream 243784 41086698 ~ 41167970 (+) True G708034
TU803204 other upstream 1087981 40321573 ~ 40323773 (+) True LOC110530920
TU803205 other upstream 1090462 40166208 ~ 40321292 (+) False LOC110530920
TU806817 other downstream 1707814 43196560 ~ 43197642 (+) True G709490
TU808451 other downstream 2959838 44448584 ~ 44448973 (+) True G711021
TU809309 other downstream 4158111 45646857 ~ 45647377 (+) True G711845
TU809392 other downstream 4304523 45793269 ~ 45794549 (+) True G711912
TU810963 other downstream 4976652 46465398 ~ 46466227 (+) True G713405

Expression Profile