RNA id: TU806008


Basic Information

Item Value
RNA id TU806008
length 1469
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G708762
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 41883351 ~ 41931521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggagtctcaggtaagtttgttgcaccccatatacagtaccattgccacctactgtccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctggttaagcacatatacctgcacacatactggactgataaggaacactgctttaactattataagtagggacagggagtctcaggtaagtttgttgcaccccatatacagtcagtgtacagtaccattgccacctactgtccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctgggtgtaagcacatatacctgcacacatactggactgataaggagcactgcttttaactattattagtagtagtattataatgatttgaacaagttgggacaacccttcagttcactactgtacctatcaattatccagtagtagtgattatggttcctcaatatacatttaacatattacagcgtaggctatgtgttacagcactacttttggtgttttttcaggaattgctcttgagaaaatgtcatgtaattgtcccctccaaagttgataacagattttagcccctgctagggcagatggcacacagacagcagaactggggacagatatgcagggacagactggcagagacagggagtctcaggtaagtttgttgcaccccatatacagtcagtgtacagtaccattgccacctactctccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctggttgtaaaaagcacatatacctgcatacatactggactgataaggaacactgcttttaactattattactgtccagtatgtatgcagGTAtgtgtactacaaccagcaataccaagaaaggctgggtgtaagcacatatacctgcacacatactggactgataaggagcactgcttttaactattattactgtccagtatgtatgcaggtatatgtactacaaccagcaataacaagaaaggctggttgtaaaagcacatatacctgcatacatactggactgataaggaacactgttTTTAATTttgattagtagtagtattaaaatgatttgaacaagttgggacaacccttcagttcactactgtacctatcaattatccagtagtagtgattatggttcctcaatatacatttaacatattacagcgtaggctatgtgttacagcactacttttggtgtttgaTTTGAACAagtatgtactacaaccagcaaaaccaagaaaggctgggtgtaagcacatatacctgcacacatactggactgataaagagcactgcttttaactattattagtagtagtattataatgatttgaacaagttgggacaacccttcagttcactactgtacctatcaattatccagtagtagtgattatggttcctcaatatacatttaacatattacagcgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU806001 lncRNA downstream 16069 41850901 ~ 41867282 (-) False G708758
TU806002 lncRNA downstream 16069 41857258 ~ 41867282 (-) True G708758
TU805984 lncRNA downstream 119928 41756991 ~ 41763423 (-) True G708745
TU805975 lncRNA downstream 120813 41754445 ~ 41762538 (-) True G708738
TU805945 lncRNA downstream 157498 41725469 ~ 41725853 (-) True LOC118965611
TU806017 lncRNA upstream 8340 41932539 ~ 41942456 (-) True G708769
TU806023 lncRNA upstream 44639 41968838 ~ 41975063 (-) True G708775
TU805967 lncRNA upstream 49882 41974081 ~ 42221908 (-) False G708736
TU805957 lncRNA upstream 52303 41976502 ~ 41992943 (-) False G708735
TU805973 lncRNA upstream 60472 41984671 ~ 41990975 (-) False G708737
XR_005053021.1 mRNA downstream 154364 41725521 ~ 41728987 (-) False LOC118965611
XM_036985475.1 mRNA downstream 913873 40958142 ~ 40969478 (-) True LOC110529916
XM_021612576.2 mRNA downstream 913877 40958142 ~ 40969474 (-) False LOC110529916
XR_005052877.1 mRNA downstream 1083314 40779851 ~ 40800037 (-) False LOC118965517
XM_036985477.1 mRNA upstream 416483 42340682 ~ 42420086 (-) False klhl18
XM_036985478.1 mRNA upstream 416483 42340682 ~ 42420087 (-) False klhl18
XM_036985479.1 mRNA upstream 416483 42340682 ~ 42420087 (-) True klhl18
XM_021612584.2 mRNA upstream 507592 42431791 ~ 42525669 (-) False puf60a
XM_021612585.2 mRNA upstream 507592 42431791 ~ 42526527 (-) False puf60a
TU804129 other downstream 1923738 39956961 ~ 39959613 (-) True slc22a16
TU803684 other downstream 2657038 39219644 ~ 39226313 (-) True G706683
TU801790 other downstream 3569548 38313489 ~ 38313803 (-) True G704874
TU801610 other downstream 3845005 38037725 ~ 38038346 (-) True G704702
TU800488 other downstream 4391194 37489227 ~ 37492157 (-) True LOC110530908
TU806574 other upstream 795572 42719771 ~ 42720699 (-) True G709272
TU806781 other upstream 1246561 43170760 ~ 43171082 (-) True G709454
TU808567 other upstream 2614594 44538793 ~ 44539504 (-) True G711133
TU810338 other upstream 3533578 45457777 ~ 45458248 (-) True G712814
TU811283 other upstream 4386931 46311130 ~ 46325681 (-) True crfb16

Expression Profile