RNA id: TU806006


Basic Information

Item Value
RNA id TU806006
length 1554
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G708762
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 41883351 ~ 41931521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttgagaaaatgtcatgtaattgtcccctccaaagttgatatcagattttagcccctgctagggcagatggcacacagacagcagaactggggacagatatgcagggacagggagtctcaggtaagtttgttgcaccccatatacagtcagtgtacagtaccattgccacctactgtccagtatgtatgtaggtatatgtactacaaccagcaataccaagaaaggctggttgtaagcacatatacctgcatacatactggactgataaggaacactgcttttaactattattactgtccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctggttgtaaagcacatatacctgcatacatactggactgataaggagcactgcttttagtagtagtattataatgatttgaacaagttttgacaacccttcagttcactactgtacctatcaattatccagtagtagtgattatggttcctcaatatacatttaacatattacagcgtaggctatgtgttacagcactacttttggtgtttttttcaggaattgctcttgagaaaatgtcatgtaattgtcccttctaagttgatatcagattttagcccctgctagggcagatggcacacagacagcagaactggggacagatatgcagggacagggagtctcaggtaagtttgttgcaccccatatacagtcagtgtacagtaccattgccacctactgtccagtatgtatgtaggtatatgtactacaaccagcaataccaagaaaggctggttaagcacatatacctgcacacatactggactgataaggaacactgctttaactattattactgtccagtatgtatgcaggtatatgtactacaaccagcaataacaagaaaggctggttgtaaagcacatatacctgcatacatactggacagtaataatagttaaaagcagtgttccttatcagtccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctggttgtaaaaagcacatatacctgcatacatactggactgataaggaacactgcttttaactattattactgtccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaagtctcaggtaagtttgtttgccatccatatacagtcagtgtacagtaccattgccacctactgtccagtatgtatacaggtatatgtactacaaccagcaataccaagaaaggctggttgtaatatacctgcacacatactggactgataaggagcactgcttttaactattattactgtccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctgggtgtaaagcacatatacctgcacacataaggagcactgcttttaactattattagtagtagtattaaaatgatttgaacaagttgggacaacccttcagttcactactgtacctatcaattatccagtagtagtgattatggttcctcaatatacattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU806005 lncRNA downstream 38489 41870434 ~ 41884426 (-) True G708761
TU806001 lncRNA downstream 55633 41850901 ~ 41867282 (-) False G708758
TU806002 lncRNA downstream 55633 41857258 ~ 41867282 (-) True G708758
TU805984 lncRNA downstream 159492 41756991 ~ 41763423 (-) True G708745
TU805975 lncRNA downstream 160377 41754445 ~ 41762538 (-) True G708738
TU806017 lncRNA upstream 1018 41932539 ~ 41942456 (-) True G708769
TU806023 lncRNA upstream 37317 41968838 ~ 41975063 (-) True G708775
TU805967 lncRNA upstream 42560 41974081 ~ 42221908 (-) False G708736
TU805957 lncRNA upstream 44981 41976502 ~ 41992943 (-) False G708735
TU805973 lncRNA upstream 53150 41984671 ~ 41990975 (-) False G708737
XR_005053021.1 mRNA downstream 193928 41725521 ~ 41728987 (-) False LOC118965611
XM_036985475.1 mRNA downstream 953437 40958142 ~ 40969478 (-) True LOC110529916
XM_021612576.2 mRNA downstream 953441 40958142 ~ 40969474 (-) False LOC110529916
XR_005052877.1 mRNA downstream 1122878 40779851 ~ 40800037 (-) False LOC118965517
XM_036985477.1 mRNA upstream 409161 42340682 ~ 42420086 (-) False klhl18
XM_036985478.1 mRNA upstream 409161 42340682 ~ 42420087 (-) False klhl18
XM_036985479.1 mRNA upstream 409161 42340682 ~ 42420087 (-) True klhl18
XM_021612584.2 mRNA upstream 500270 42431791 ~ 42525669 (-) False puf60a
XM_021612585.2 mRNA upstream 500270 42431791 ~ 42526527 (-) False puf60a
TU804129 other downstream 1963302 39956961 ~ 39959613 (-) True slc22a16
TU803684 other downstream 2696602 39219644 ~ 39226313 (-) True G706683
TU801790 other downstream 3609112 38313489 ~ 38313803 (-) True G704874
TU801610 other downstream 3884569 38037725 ~ 38038346 (-) True G704702
TU800488 other downstream 4430758 37489227 ~ 37492157 (-) True LOC110530908
TU806574 other upstream 788250 42719771 ~ 42720699 (-) True G709272
TU806781 other upstream 1239239 43170760 ~ 43171082 (-) True G709454
TU808567 other upstream 2607272 44538793 ~ 44539504 (-) True G711133
TU810338 other upstream 3526256 45457777 ~ 45458248 (-) True G712814
TU811283 other upstream 4379609 46311130 ~ 46325681 (-) True crfb16

Expression Profile