RNA id: TU805957


Basic Information

Item Value
RNA id TU805957
length 1717
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G708735
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 41976502 ~ 42002078 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atacagtaccattgccacctactgtccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctggttgtaaaagcacatatacctgcacacatactggactgataaggagcactgcttttaactattattactgtccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctgggtgtaagcacatatacctgcacacatactggactgataaggagcactgcttttaactattattagtagtagtattaaaatgatttgaacaagttgggacaacccttcagttcactactgtacctatcaattatccagtagtagtgattagcctccagcctgtctcagcctccagtatttatgctgcagtagtttgtgtcggggggctagggtcagtttgttatatctggagtacttctcctgtcctattcggtgtcctgtgtgaatctaagtgtgcgttctctaattctctccttctctctttctctctctcggaggacctgagccctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccacctggctgtgctgctgctccagtttcaactgacctgagccataggaccatgccccaggaatacctgacatgatgactccttgctgtccccagtccacctgactgtgctgctgctccagtttcaactattctgccttattattattcgaccatgctggtcatttatgaacatttgaacatcttgaccatgttttgttataatctccacccggcacagccagaagaggactggccaccccacatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccgccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttatgtacagcactttgagatatcagccgatgtacgaagggctatataaaataaatttgattgatttgattgattatggttcctcaatatacatttaacatattacagcgtaggctatgtgttacagcactacttttaggtttttcctttcctttaacaaaacaataaaaccatttcatgttcatatttaacaacactatggttgaatgaatctctcaccacatcgacttctgcactgccacccagaaaaagagggaacttggaacttacctcagtttaatttatgatcctaggaggacatctacgggcctttttaagtactacacctattatattCGATCAGAAAcgggagggataaacaggagataggcctgtgcaccttaaaactaaccagttgaaacgaaacacaattatattcaaaacctaaccccaaccctcgtaaccctaaccctggatcaacagactcaaaactagaaacctaaccagttgaaacaaaacacaattatattcaaaacttaaccctaacccccgtATCCCTAACACCCGTAACCctagatcaacagactcaaaactagaaacctaacccttaaccctaacccctaacccccctaaccctaaacctaacctctaacccaaacactggagcagttacaccaacttcggaggacacacatcactggaaacaacaacaaaaaatccggaCCCGttatctcccattccccaagtggacgaaaacatggcaaaaaatctaccgcatacacaggatcccaaatggacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU806023 lncRNA downstream 1439 41968838 ~ 41975063 (-) True G708775
TU806017 lncRNA downstream 34046 41932539 ~ 41942456 (-) True G708769
TU806006 lncRNA downstream 44981 41922915 ~ 41931521 (-) True G708762
TU806010 lncRNA downstream 46550 41911585 ~ 41929952 (-) True G708764
TU806008 lncRNA downstream 52303 41883351 ~ 41924199 (-) False G708762
TU806029 lncRNA upstream 4120 41997063 ~ 41997550 (-) True G708780
TU805955 lncRNA upstream 6563 41999506 ~ 42002078 (-) True G708735
TU806050 lncRNA upstream 122795 42115738 ~ 42126720 (-) True G708796
TU806059 lncRNA upstream 148014 42140957 ~ 42174826 (-) True G708804
TU806065 lncRNA upstream 181332 42174275 ~ 42181867 (-) True G708810
XR_005053021.1 mRNA downstream 247515 41725521 ~ 41728987 (-) False LOC118965611
XM_036985475.1 mRNA downstream 1007024 40958142 ~ 40969478 (-) True LOC110529916
XM_021612576.2 mRNA downstream 1007028 40958142 ~ 40969474 (-) False LOC110529916
XR_005052877.1 mRNA downstream 1176465 40779851 ~ 40800037 (-) False LOC118965517
XM_036985477.1 mRNA upstream 347739 42340682 ~ 42420086 (-) False klhl18
XM_036985478.1 mRNA upstream 347739 42340682 ~ 42420087 (-) False klhl18
XM_036985479.1 mRNA upstream 347739 42340682 ~ 42420087 (-) True klhl18
XM_021612584.2 mRNA upstream 438848 42431791 ~ 42525669 (-) False puf60a
XM_021612585.2 mRNA upstream 438848 42431791 ~ 42526527 (-) False puf60a
TU804129 other downstream 2016889 39956961 ~ 39959613 (-) True slc22a16
TU803684 other downstream 2750189 39219644 ~ 39226313 (-) True G706683
TU801790 other downstream 3662699 38313489 ~ 38313803 (-) True G704874
TU801610 other downstream 3938156 38037725 ~ 38038346 (-) True G704702
TU800488 other downstream 4484345 37489227 ~ 37492157 (-) True LOC110530908
TU806574 other upstream 726828 42719771 ~ 42720699 (-) True G709272
TU806781 other upstream 1177817 43170760 ~ 43171082 (-) True G709454
TU808567 other upstream 2545850 44538793 ~ 44539504 (-) True G711133
TU810338 other upstream 3464834 45457777 ~ 45458248 (-) True G712814
TU811283 other upstream 4318187 46311130 ~ 46325681 (-) True crfb16

Expression Profile