RNA id: TU806088


Basic Information

Item Value
RNA id TU806088
length 860
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G708827
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 42246963 ~ 42310645 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTTATCATGTAACACATCTCTTCCACTATATGTGTCACAGAAAAGTAGTCAGGGTTATGAGGTATTTTCCTCTGTCTAGGCAGCAAGTGCCCTTCTCCCAGTTTACAAACGAGATCTATTATGTCAATAGGATTTGAAAATTCACCTTGTACCAAGTCATTACATACGTAACTGcctaaccttacctaaccctaaacctaacttaaccattctaaaaaactataccttaccctaaacctaaccctaagcttaactattctaaaaaactataccttaccctaaccctaacccagactacaGCAAATCATCCACCTCTTAACCTTAACCTCAATcctactcctaaccttaacccctccccaaacctcacgcctaaccttaacctttccctTAACCCCACACCTAACCTTTCCCTTAACCCCACGCCTAACCCTAAATGTGTACCATCTCCCTAACCAGGGTTCTCATCCTAGCTCCCCTCCCTCACACTAATCCTGACCCCCCTATGGAAAGTGATCTGCACCAATCACTAAACCAAAACACTTCCTGTCTCTTCTCCCTTGTCATCAATAGTCAATCAACAGACAATTATCATACCCCTAGTAACCACATTTTCACATAGAATTAGACccctacatcaatcaatcaaacaactTCTCTACAGTTCAGCACACTTACATACCACTCAAACCATACAGAATCATTTCAGCATTTAGAAAGAACAAAAACTTAAAGGACCTCCTCACCAAAGCAAGATTcagtagtaagccaccacaagacctcaattacatgtacactttgcaacaatacattggagaaaccaaacacaccatagaaaccagactcaaacacctgtataac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU805967 lncRNA downstream 32665 41974081 ~ 42221908 (-) False G708736
TU806076 lncRNA downstream 36075 42216344 ~ 42218498 (-) True G708820
TU806065 lncRNA downstream 72706 42174275 ~ 42181867 (-) True G708810
TU806059 lncRNA downstream 79747 42140957 ~ 42174826 (-) True G708804
TU806050 lncRNA downstream 127853 42115738 ~ 42126720 (-) True G708796
TU806114 lncRNA upstream 15697 42326342 ~ 42326630 (-) True G708852
TU806377 lncRNA upstream 118773 42429418 ~ 42430176 (-) True G709096
TU806496 lncRNA upstream 269630 42580275 ~ 42627363 (-) True G709197
TU806565 lncRNA upstream 400898 42711543 ~ 42711868 (-) True G709263
TU806593 lncRNA upstream 420253 42730898 ~ 42741496 (-) True G709282
XR_005053021.1 mRNA downstream 525586 41725521 ~ 41728987 (-) False LOC118965611
XM_036985475.1 mRNA downstream 1285095 40958142 ~ 40969478 (-) True LOC110529916
XM_021612576.2 mRNA downstream 1285099 40958142 ~ 40969474 (-) False LOC110529916
XR_005052877.1 mRNA downstream 1454536 40779851 ~ 40800037 (-) False LOC118965517
XM_036985477.1 mRNA upstream 30037 42340682 ~ 42420086 (-) False klhl18
XM_036985478.1 mRNA upstream 30037 42340682 ~ 42420087 (-) False klhl18
XM_036985479.1 mRNA upstream 30037 42340682 ~ 42420087 (-) True klhl18
XM_021612584.2 mRNA upstream 121146 42431791 ~ 42525669 (-) False puf60a
XM_021612585.2 mRNA upstream 121146 42431791 ~ 42526527 (-) False puf60a
TU804129 other downstream 2294960 39956961 ~ 39959613 (-) True slc22a16
TU803684 other downstream 3028260 39219644 ~ 39226313 (-) True G706683
TU801790 other downstream 3940770 38313489 ~ 38313803 (-) True G704874
TU801610 other downstream 4216227 38037725 ~ 38038346 (-) True G704702
TU800488 other downstream 4762416 37489227 ~ 37492157 (-) True LOC110530908
TU806574 other upstream 409126 42719771 ~ 42720699 (-) True G709272
TU806781 other upstream 860115 43170760 ~ 43171082 (-) True G709454
TU808567 other upstream 2228148 44538793 ~ 44539504 (-) True G711133
TU810338 other upstream 3147132 45457777 ~ 45458248 (-) True G712814
TU811283 other upstream 4000485 46311130 ~ 46325681 (-) True crfb16