RNA id: TU806377


Basic Information

Item Value
RNA id TU806377
length 759
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G709096
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 42429418 ~ 42430176 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgaacatgcacctgtggaacagtcgttaaaaCACTAAccgcttacagatggtaggcaattaaggtcgcagttctgaaaacttaggacactaaagaggcctttctactgactctccTTTCTACTGAAAAAGTACTCTTAACTGACGAGTCAGGGTTTTgtatcaccaggggtgatggtaggattagcatttatcgtcgaaggaatgagcattacaccgaggcctctactctggagcgggatcgatttggaggtggatggtccgtcatgctctggggcggtgtgtcacagcatcatcaaactgagcttgttgtcattgcaggcaatctcaaccctGTGCATTactgggaagacatcctcctctctcatgtggtacccttcctgcaggctcatcctgacatgaccctccagcaaatgctcgttctgtgcttgatttcctgcaagacaggaatgtcagtgttctgccatggccattgagcacgtctgggacctgttggatcggagggtgagggctagtgccattccccccagaaatgtccaggaacttgcaggtgccttggtggaaaaggggggggtaacatctcacagcaagaactgacaaatctggtgcagtccatcaggaggagatgcactgcagtacttaatgtgtccacaccagatactgactgttacttttgatttgggacccccctttgttcagggacacattattccatttctgttagtcaaatgtctttggaacttgttcagtttatgtccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU806114 lncRNA downstream 102788 42326342 ~ 42326630 (-) True G708852
TU806086 lncRNA downstream 118773 42246963 ~ 42310645 (-) False G708827
TU806087 lncRNA downstream 118773 42253104 ~ 42310645 (-) False G708827
TU806088 lncRNA downstream 118773 42254573 ~ 42310645 (-) True G708827
TU805964 lncRNA downstream 138333 42219636 ~ 42291085 (-) True G708736
TU806496 lncRNA upstream 150099 42580275 ~ 42627363 (-) True G709197
TU806565 lncRNA upstream 281367 42711543 ~ 42711868 (-) True G709263
TU806593 lncRNA upstream 300722 42730898 ~ 42741496 (-) True G709282
TU806644 lncRNA upstream 625442 43055618 ~ 43060881 (-) True G709322
TU806653 lncRNA upstream 640259 43070435 ~ 43070702 (-) True G709329
XM_036985478.1 mRNA downstream 9331 42340682 ~ 42420087 (-) False klhl18
XM_036985479.1 mRNA downstream 9331 42340682 ~ 42420087 (-) True klhl18
XM_036985477.1 mRNA downstream 9332 42340682 ~ 42420086 (-) False klhl18
XR_005053021.1 mRNA downstream 700431 41725521 ~ 41728987 (-) False LOC118965611
XM_036985475.1 mRNA downstream 1459940 40958142 ~ 40969478 (-) True LOC110529916
XM_021612584.2 mRNA upstream 1615 42431791 ~ 42525669 (-) False puf60a
XM_021612585.2 mRNA upstream 1615 42431791 ~ 42526527 (-) False puf60a
XM_021612583.2 mRNA upstream 1615 42431791 ~ 42526586 (-) True puf60a
XM_021612591.2 mRNA upstream 1169578 43599754 ~ 43602305 (-) False mycb
XM_021612593.2 mRNA upstream 1169578 43599754 ~ 43602305 (-) True mycb
TU804129 other downstream 2469805 39956961 ~ 39959613 (-) True slc22a16
TU803684 other downstream 3203105 39219644 ~ 39226313 (-) True G706683
TU801790 other downstream 4115615 38313489 ~ 38313803 (-) True G704874
TU801610 other downstream 4391072 38037725 ~ 38038346 (-) True G704702
TU800488 other downstream 4937261 37489227 ~ 37492157 (-) True LOC110530908
TU806574 other upstream 289595 42719771 ~ 42720699 (-) True G709272
TU806781 other upstream 740584 43170760 ~ 43171082 (-) True G709454
TU808567 other upstream 2108617 44538793 ~ 44539504 (-) True G711133
TU810338 other upstream 3027601 45457777 ~ 45458248 (-) True G712814
TU811283 other upstream 3880954 46311130 ~ 46325681 (-) True crfb16

Expression Profile