RNA id: TU806981


Basic Information

Item Value
RNA id TU806981
length 1281
lncRNA type inter_gene
GC content 0.39
exon number 6
gene id G709639
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 43290831 ~ 43377092 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aactacagtggaaggtgTGGTGGCTTTTAACACTCTAATGAAGGTGTCAGAACCATCCATAAATGAACTATGGTGTTTGGgatggtgggttttaacactcttatgaaGGTGTCAGAACCATCCATAAATGAACTATAGTGTTTGGGATGGTGGGTTTTAAAACTCCAATTTAGgtttcataaccagccataaattaactacagtgttgtggttggtgggttttaacactcttattttggtgtcataaccagccataaattaactacagtgttggggttggtgggttttaacactcctctgtaggtgtcataactagccataaattaactacagtgttggggtagGTGGGTTTTAactctcttatgtaggtgtcataaccatccataaattaactatagtgtttgggttggtgggttttaaacattcttatttaggtgtcataaccagccataaattaactacagtgttggggttggtgggttttaacactcttatttaggtgtcataaccagccatatatgaactacagtgttggggttggtgggttttaacactgtgATGtatgtgtcataaccagccataaattgaCTACcgtggaaggtttggtgggttttaacactctcatgtaggtgtcattaccagccttaaattaactacagtgttggggttggtgggttttaacactcttatttagGTGTCATAactagccataaattaactacagtgttggggttggtgggttttaactctcttatgtaggtgtcataaccagccataaattaacttcagtgttggggttggtgggttttaacactcttctttaggtgtcataaccagccctaaatgaactacagtgttggggttggtgggttttaacactcttctttaggtgtcacaaacagccataaatgaactacagtgttggggttggtgggttatgtatgtgttatgtaggtgtcataaccagctataaattaactacagtggaaggtttggtgggttttaacactcttatgtaggtgtcagaaccagccataaattaactacagtggaaggtttggtgggttctaacactcttctttaggtgtcataaccagccctaaatgaactacagtgttggggttgttgggttCTAACACTCTTATGTggatgtcataaccagccataaattaactacagtggaaggtttggtgggtttcaACAATCTTATGTTGTTGTCAGAACCATTCCATAAATGAACTAGAGTgtttgggttggtgggttttaacactcttattaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU807017 lncRNA downstream 171 43352051 ~ 43353199 (-) True G709655
TU807018 lncRNA downstream 1580 43347422 ~ 43351790 (-) False G709655
TU807011 lncRNA downstream 8059 43339334 ~ 43345311 (-) True G709653
TU807007 lncRNA downstream 15422 43335395 ~ 43337948 (-) True G709651
TU806942 lncRNA downstream 73663 43279491 ~ 43279707 (-) True G709609
TU807028 lncRNA upstream 721 43369730 ~ 43372842 (-) True G709662
TU807029 lncRNA upstream 5938 43374947 ~ 43377664 (-) True G709663
TU807033 lncRNA upstream 11550 43380559 ~ 43381176 (-) True G709667
TU807209 lncRNA upstream 151416 43520425 ~ 43520797 (-) True G709835
TU807894 lncRNA upstream 218675 43587684 ~ 43588262 (-) True G710488
XM_021612583.2 mRNA downstream 826784 42431791 ~ 42526586 (-) True puf60a
XM_021612585.2 mRNA downstream 826843 42431791 ~ 42526527 (-) False puf60a
XM_021612584.2 mRNA downstream 827701 42431791 ~ 42525669 (-) False puf60a
XM_036985478.1 mRNA downstream 933283 42340682 ~ 42420087 (-) False klhl18
XM_021612591.2 mRNA upstream 230745 43599754 ~ 43602305 (-) False mycb
XM_021612593.2 mRNA upstream 230745 43599754 ~ 43602305 (-) True mycb
XR_005053023.1 mRNA upstream 390320 43759329 ~ 43763318 (-) True LOC118965613
XM_021612600.2 mRNA upstream 815984 44184993 ~ 44436559 (-) False efr3a
XM_021612601.2 mRNA upstream 815984 44184993 ~ 44436559 (-) False efr3a
TU806781 other downstream 182288 43170760 ~ 43171082 (-) True G709454
TU806574 other downstream 632671 42719771 ~ 42720699 (-) True G709272
TU804129 other downstream 3393757 39956961 ~ 39959613 (-) True slc22a16
TU803684 other downstream 4127057 39219644 ~ 39226313 (-) True G706683
TU801790 other downstream 5039567 38313489 ~ 38313803 (-) True G704874
TU808567 other upstream 1169784 44538793 ~ 44539504 (-) True G711133
TU810338 other upstream 2088768 45457777 ~ 45458248 (-) True G712814
TU811283 other upstream 2942121 46311130 ~ 46325681 (-) True crfb16
TU811888 other upstream 3682458 47051467 ~ 47057660 (-) True LOC110529973
TU812043 other upstream 3809415 47178424 ~ 47178736 (-) True G714425

Expression Profile