RNA id: TU810333



Basic Information


Item Value
RNA id TU810333
length 227
lncRNA type antisense_over
GC content 0.50
exon number 1
gene id G712809
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 45452208 ~ 45452434 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGCTGTCAGGGATGTTTCCAGAGTGACTTAGTTTTTTCattaatttttatttaaaaatgattGAAAAACCTTGATGTCCTGGATGAGCTTCTGGGTGGGGGTGTTGATGGGGGCCTTGGTGTCGATGACGTTCTGCATGGCGCTGGCCCAGCGCGTGGACTCGTTCAGGAGCTTGGTGTAGAGACGGTACGAGTGCTTCCGGCCGTAAACTGTGACGTTCCAGTAAC

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU810330 lncRNA downstream 2347 45449595 ~ 45449861 (-) True G712806
TU810328 lncRNA downstream 4706 45447269 ~ 45447502 (-) True G712804
TU810327 lncRNA downstream 6665 45445209 ~ 45445543 (-) True G712803
TU810318 lncRNA downstream 21212 45430773 ~ 45430996 (-) True G712794
TU810313 lncRNA downstream 27597 45424380 ~ 45424611 (-) True G712789
TU810334 lncRNA upstream 598 45453032 ~ 45453316 (-) True G712810
TU810336 lncRNA upstream 3475 45455909 ~ 45456527 (-) True G712812
TU810340 lncRNA upstream 6699 45459133 ~ 45462621 (-) False G712815
TU810339 lncRNA upstream 7646 45460080 ~ 45460983 (-) True G712815
TU810482 lncRNA upstream 204742 45657176 ~ 45711563 (-) False G712949
XM_021612606.2 mRNA downstream 278467 45122083 ~ 45173741 (-) True basp1
XR_002474328.2 mRNA downstream 467940 44980969 ~ 44984268 (-) True LOC110529115
XM_021612601.2 mRNA downstream 1015649 44184993 ~ 44436559 (-) False efr3a
XM_021612608.2 mRNA upstream 32584 45485018 ~ 45495100 (-) False znf622
XM_021612609.2 mRNA upstream 32584 45485018 ~ 45495101 (-) False znf622
XM_036985484.1 mRNA upstream 32584 45485018 ~ 45495101 (-) True znf622
XM_021612611.2 mRNA upstream 56647 45509081 ~ 45546117 (-) False retreg1
XM_021612610.2 mRNA upstream 56647 45509081 ~ 45601564 (-) True retreg1
TU808567 other downstream 912704 44538793 ~ 44539504 (-) True G711133
TU806781 other downstream 2281126 43170760 ~ 43171082 (-) True G709454
TU806574 other downstream 2731509 42719771 ~ 42720699 (-) True G709272
TU804129 other downstream 5492595 39956961 ~ 39959613 (-) True slc22a16
TU803684 other downstream 6225895 39219644 ~ 39226313 (-) True G706683
TU810338 other upstream 5343 45457777 ~ 45458248 (-) True G712814
TU811283 other upstream 858696 46311130 ~ 46325681 (-) True crfb16
TU811888 other upstream 1599033 47051467 ~ 47057660 (-) True LOC110529973
TU812043 other upstream 1725990 47178424 ~ 47178736 (-) True G714425
TU813564 other upstream 2836508 48288942 ~ 48289581 (-) True G715865

Expression Profile


TU810333 Expression in all Baseline Samples

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TU810333 Expression in each Bioproject

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TU810333 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
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