RNA id: TU810545



Basic Information


Item Value
RNA id TU810545
length 251
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G713002
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 45772129 ~ 45772379 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cctctgtctgatcacagccaaattACGTTGTTCCTCAAGAGAACAGACTTGAAAAcaaccacacattcacagcccagtaagctgtacaacatctgAAATGTAtacagatgggcccaaaacagcacagaagaataccagaaagcaacctgtaaccaaaatatccaaacactcttagataactttctggataccacattcactcacagtaaagaaggcctcaatctagcagtacaaaacatcaactatatatt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU810541 lncRNA downstream 5041 45763667 ~ 45767088 (-) True G712998
TU810507 lncRNA downstream 53630 45718282 ~ 45718499 (-) True G712973
TU810506 lncRNA downstream 54253 45717665 ~ 45717876 (-) True G712972
TU810503 lncRNA downstream 58309 45713546 ~ 45713820 (-) True G712969
TU810502 lncRNA downstream 59290 45712616 ~ 45712839 (-) True G712968
TU810554 lncRNA upstream 12407 45784786 ~ 45785064 (-) True G713011
TU810595 lncRNA upstream 91107 45863486 ~ 45891714 (-) True G713049
TU810619 lncRNA upstream 132806 45905185 ~ 45944390 (-) True G713072
TU810663 lncRNA upstream 182492 45954871 ~ 45955074 (-) True G713114
TU810691 lncRNA upstream 218564 45990943 ~ 45991219 (-) True G713141
XM_021612616.2 mRNA downstream 87137 45678859 ~ 45684992 (-) True nol7
XM_021612610.2 mRNA downstream 170565 45509081 ~ 45601564 (-) True retreg1
XM_021612611.2 mRNA downstream 226012 45509081 ~ 45546117 (-) False retreg1
XM_021612609.2 mRNA downstream 277028 45485018 ~ 45495101 (-) False znf622
XM_021612624.2 mRNA upstream 20869 45793248 ~ 45924729 (-) False amph
XM_021612626.2 mRNA upstream 20869 45793248 ~ 45924729 (-) False amph
XM_021612621.2 mRNA upstream 20869 45793248 ~ 45924730 (-) False amph
XM_021612622.2 mRNA upstream 20869 45793248 ~ 45924730 (-) False amph
XM_021612623.2 mRNA upstream 20869 45793248 ~ 45924730 (-) False amph
TU810338 other downstream 313881 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 1232625 44538793 ~ 44539504 (-) True G711133
TU806781 other downstream 2601047 43170760 ~ 43171082 (-) True G709454
TU806574 other downstream 3051430 42719771 ~ 42720699 (-) True G709272
TU804129 other downstream 5812516 39956961 ~ 39959613 (-) True slc22a16
TU811283 other upstream 538751 46311130 ~ 46325681 (-) True crfb16
TU811888 other upstream 1279088 47051467 ~ 47057660 (-) True LOC110529973
TU812043 other upstream 1406045 47178424 ~ 47178736 (-) True G714425
TU813564 other upstream 2516563 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 2769912 48542291 ~ 48616523 (-) True dlg1l

Expression Profile