RNA id: TU810619



Basic Information


Item Value
RNA id TU810619
length 231
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G713072
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 45905185 ~ 45944390 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gatttggaaaggcacacacctgtctatataaggtcccacaggtggactccaatccagttgtagaaacatatcaagaatgatcagtggaaacaggatgcacctgagctcaattttgagtctcattgcaaagggtctgaatacttgtgtaaataaaagtatatctgtttttgttatttttaatacatttgcaagaatttcctaaaacctgttttcgctttggcattatggggt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU810595 lncRNA downstream 13471 45863486 ~ 45891714 (-) True G713049
TU810554 lncRNA downstream 120121 45784786 ~ 45785064 (-) True G713011
TU810545 lncRNA downstream 132806 45772129 ~ 45772379 (-) True G713002
TU810541 lncRNA downstream 138097 45763667 ~ 45767088 (-) True G712998
TU810507 lncRNA downstream 186686 45718282 ~ 45718499 (-) True G712973
TU810663 lncRNA upstream 10481 45954871 ~ 45955074 (-) True G713114
TU810691 lncRNA upstream 46553 45990943 ~ 45991219 (-) True G713141
TU810692 lncRNA upstream 47425 45991815 ~ 45992105 (-) True G713142
TU810700 lncRNA upstream 57769 46002159 ~ 46002461 (-) True G713150
TU810714 lncRNA upstream 92856 46037246 ~ 46037460 (-) True G713164
XM_021612616.2 mRNA downstream 220193 45678859 ~ 45684992 (-) True nol7
XM_021612610.2 mRNA downstream 303621 45509081 ~ 45601564 (-) True retreg1
XM_021612611.2 mRNA downstream 359068 45509081 ~ 45546117 (-) False retreg1
XM_021612609.2 mRNA downstream 410084 45485018 ~ 45495101 (-) False znf622
XM_021612631.2 mRNA upstream 62021 46006411 ~ 46033000 (-) True tmem71
XM_021612634.2 mRNA upstream 117353 46061743 ~ 46074046 (-) False ift57
XM_036985498.1 mRNA upstream 118091 46062481 ~ 46074020 (-) True ift57
XM_021612635.2 mRNA upstream 178354 46122744 ~ 46133988 (-) True cavin4a
XM_021612636.2 mRNA upstream 219263 46163653 ~ 46241435 (-) False tmeff1a
TU810338 other downstream 446937 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 1365681 44538793 ~ 44539504 (-) True G711133
TU806781 other downstream 2734103 43170760 ~ 43171082 (-) True G709454
TU806574 other downstream 3184486 42719771 ~ 42720699 (-) True G709272
TU804129 other downstream 5945572 39956961 ~ 39959613 (-) True slc22a16
TU811283 other upstream 366740 46311130 ~ 46325681 (-) True crfb16
TU811888 other upstream 1107077 47051467 ~ 47057660 (-) True LOC110529973
TU812043 other upstream 1234034 47178424 ~ 47178736 (-) True G714425
TU813564 other upstream 2344552 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 2597901 48542291 ~ 48616523 (-) True dlg1l

Expression Profile