RNA id: TCONS_00035687


Basic Information

Item Value
RNA id TCONS_00035687
length 5750
RNA type mRNA
GC content 0.43
exon number 27
gene id XLOC_018108
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 26478197 ~ 26532167 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGCTCGAGAATCACCTGAGCATCAGACCAGACTCCGCTCTGTCAGCAGCTCCAGCCAAGTAGCATGATGAGACTGTCTGTCGCCTTTCGCCACGCTCGCCGGAGCCACTCAACCATACAAAGATCACGTACTTGTGTCAAATTTTTATCCCGGGAGAACAGACACACACCTGATATCAGCGCGGTTTCTTTTCTGCGGGCTCGAGAAGCGAGTTCTACCAGCGGTACAACTGAAACAGCAGCCAGTTTACAAAGTCATGCGAGAAAATACGAAGGACCACCGTATGAAAGAGCAGTTGGTGACATTGTTCAGAGGTGCAGAGAAGAGCTCAAATCTATTGGAGAAAACAACCCAGGCCTTAAACCCACACTGGCTATCATACAGGCTGGTGAAGATGATGGTTTATTGGAAATGAATAAGAAGATGGCTGGAAAGATTGGCTTAAATGTGATGCAGATTTGTCTTCCACACCGGTGCACAGAAGAGGAGGTCATTGAGGAGGTCTTGAGGTTAAATAAAGATTCTCGTGTTCATGGCATTTTCCTGCACCTTCCTCAGACCTTCCTTTCCAAAAGTGTTCGTAATGCCATCAAGCCACAGAAGGATGTGGATGGGGTGTGTGATCTTAATGTTGGCCGTGTGGTGTTGGGTGATAAGACAGATGGCTTCACCTCACCTGTTGCTGGAGCTGTGCTGGAGCTGCTTGCCAAACATGatgctCCGTTAGTTGGCAAGATGGCAGTGCTGGTGGGTTTGGAGGGACCCCTGAAGGTGGCTCTTCAATGTCTTCTGCAAAACAATGGCATGATACTGCAAACCTGCAGGTGGAGCTCAACAAACCTGCAAAAACAGATCATGGATTCAGATGTGGTGATAACATTAAACACAAACCAAAATCACATTCCATCAACATGGTTAAGGCCAGGCGTGGCAGCCATCAACCTCGGTTCGGCACTATTGGAAGAGCACCCTGACAGCTGGGAGGCCACAGTTGAAGCCCAGTCTGCTGCAGGACTTGGTCCTTTAACTGCTGCTTTTCGAATGCAGCATGTGGTGAGGAGTAGCAGAAGGTGGATACAGGAACAGCAGTACCAGCCATGGAATATCCGGCCGCTAAAACTTCACCCACTGTCACCTGTGCCCAGTGATATCGAGATCTCCAGAGCACAAACTCCCAAACCCATATCCCAGCTTGCCCAGGAGATCGGCCTGCTACCAGAGGAGCTTGAGGCCTATGGGAACACCAAAGCCAAAGTCCATTTATCTCTCCTCAACCGCCTCCAACACCAGCCTGATGGCAGATATGTGCTGGTAGCAGGTATAACTCCCACTCCTCTGGGCGAGGGGAAGAGTACAGTGACCATAGGTTTGGCTCAGGCTCTCACCGCTCATCTCAAACTCAACTCCTTCGCCTGCCTGAGACAGCCTTCACAAGGCCCAACTTTTGGAGTCAAAGGAGGAGCAGCGGGTGGGGGATATGCACAGGTCATTCCTATGGAGGAGTTTAATCTCCACCTCACAGGAGACATCCACGCTATAACCGCAGCTAATAATCTAGTGGCGGCAGCTATTGATGCCCGCATTCTCCATGAAGCTACGCAATCAGACAAGGCCCTGTACAGCAGACTAGTGCCATCTGTTAATGGTGTGAGGCGCTTCTCTCCCATACAGCTGGCTCGTCTACAGcgtCTTGGAATAAACAAATCCAATCCCACTGATCTCACACCACAAGAGGTCAGTGCTTTTGTCCGTCTTGACCTTGACCCTGAGAAGGTCACATGGCAAAGAGTTGTTGACACCAATGACCGATTTCTGCGCAAGATCACTATAGGCCAGGCCAACACTGAAAAAGGCCATGCTCGCCAGACCCAGTTTGATATCGCGGTGGCCAGTGAGATCATGGCCATCCTCGCTCTGACTGATGGATTGGCTGACATGCGGGCCAGACTGGGGCGGATGGTTGTTGGCAGCAGCAGGAATGGACAGGCGATCACTGCAGATgacctgGGTGTGACCGGGGCTTTGGCCGTCCTCATGAAAGATGCTATCAAACCCACACTAATGCAGACACTGGAGGGCACTCCAGTGTTTGTGCATGCAGGGCCTTTCGCTAACATCGCCCATGGGAACTCCTCTGTCTTGGCAGATAAGCTGGCTCTTAAACTAGTTGGAGAAGAGGGCTATGTTGTGACAGAAGCTGGTTTTGGTGCAGATATTGGCATGGAGAAGTTTTTCAACATTAAGTGTCGGACTTCTGGACTGAGGCCtaatgttgttgtgctggttgccACCATACGCGCTCTGAAGATGCATGGAGGTGGACCAAATGTTACAGCTGGTGCACCACTGCCTAAAGAATATATCGAGGAGAATTTACAGCTGGTTGCAGATGGCTGCAGTAACCTGAAGAAGCAGATTCAGATCGCTCATCTCTTTGGAGTTCCTGTGGTTGTTGCTTTAAATGCCTTCAAGACAGACACTCAAGCAGAGATTGACCTGGTTTGTCGCATTGCAAAGGCTTCTGGGGCGTCCGCTGCAGTGCCATGTCATCATTGGTCCAGAGGTGGACGGGGCTCTCTTGAACTGGCACACGCTGTAAAGGAAGTTGCTGCTCAGGGAAGCCGTTTTCAGTTCCTGTATAACTTGCAGgATCCTATTGTAGAGAAAATTCGCACTATTGCACAGAAGGTTTACGGCGCTGAAGACATTGAGCTTTCATCTGAGGCTCAAGCTAAGATTGACTACTACAATCAACAGGGCTTTGGTGCTCTTCCTATCTGCATGGCCAAAACCCACCTGTCTCTCTCTCACATGCCTGAGAAAAAAGGTGTTCCCACCAACTTTATCCTGCCCATCAGAGACGTCCGTGCCAGCATCGGCGCAGGCTTTATCTACCCTTTAGTTGGAACAATGAGCACTATGCCAGGCTTGCCTACACGACCCTGTTTCTATGACATTGACCTTGATCCTGTGACCGAGGAGATAAAAGGCCTTTTCTGAGGACACACTCTTCACCAGTGCGAACTCAACTAGGTCTTAATTCACACTGCAAACATTTGTGCTGAGTTACAATGTTTCGATTGGCTTTACTTAGTATTTCGTTAAACTATGTAAAATTTCTAATTCTGTTCTATTGAGTCTGCAGACTGAGGTTGTATTACAAAACATGAAGTTTATatgattaaaggaatagttcacttcTAATGACTGGTAACCATTGAGTTCCACTTAAGTTCCAGTTGAGGctctccattgacttccatagtatttagtTTTGATGGCATCAATTTTAAAGACATCTTTTGTGATTAACattagaaagaaactcatacaagTTTGAAACAAGTTGGGAGTGAGTACATGaagtgaactactcctttaaggATCACGTAtgagtcaaattttttttttcatttggtaaAAAAGTGACACATGACAAAACAAATTGGGCCACATATTCCTGTAGTCTGAACTCCTGAAGCCAAAAGTGTTACAACACAgacatatttttatgcttttcaaATGCCATAAATAACCCATTTATCCTAAGTGATTTAATCTGTTTTTCCATTTTTTCAGGTGTTTCTTGTTTTCCATGTTGGTCTCCATTCATATGCCTAAGATTACAAGCTCATCCAATGTTTAATGAGAATGAAACTACTGGGAGAAACTTCAAACATTCCATCTCATTGGTTTTGCacacttgtgtttgtttttaaaaccaaatCTTAAATGTTCTCTTACTTGATGAATTTTTCATTTCGCAGCAACTTTCATCAAATTGAATGTAATTTTTAGTTGTTGGTTTGGATAATTGGTGAGTTTGCTGTTGTAATTTGACGATACACAGGGCAACTTTTAGAGCAGTGATGCTTAGAAactctttaaactttttttccatttataaTGCACTTTAAAACAGTACAGTTGAACAAAGTGCTGACAATAGAATGAAACAAAGCCTAGCACAaactttaaaatagaaataaataaacgtAAAATGTCAACATATCAGGCTGTGCTGAAAGCCAACTTTAGCAAACGGGTTTTAAGAagagatttaaaaacagtaatggaAGAGGCTGGCCTAATATACAACGGCAGCCCATTCCACAATTTAGGTGTGGCCACAGCAAAAGCCTGATCCCCTCTGCTTTTGACTGGTCCTGGGCACATCCAGAAGGAGCTGGTTGGCTGACCTGAGTGAATGATAAGGTGTGTAGGGACAGAGAGGCTCAGAGAGGTAAAGAGGTGCAGcaccattaaaaacaaataaaattaacttaaaatgaTCCTGAAATGCAAGGAAACAAGGAAGCTAAATCTATTACTGCACATTTAAATTGACATTGTAAgcaaatttgattaaaattaattatataaaaaccCAGTTTTCTGTTCACATCTGAAAACTTACTGGAATAATAAGTTTATGCTCTTTTCTTTGTTCCTCTGCCACTAAGCAGCtgccattttaaatgttttctgacAGCTGGGGCACATGATTTGCTGCTTGGTTTCTGAGTGGAGGATCTCAAATAATTGCATATGACTGATCTTACAGAtccacccagcaggcacagggcaacaacatgacgtcagattgatgttgtacctcaACGTTGTGGGGGAGTTGcaatttgttttgaaatttgttttaaaaatcaggttgacatcaaaaCCCAACATCAGACTGACATCAaggtccaatgtccaacctaaaatcaaccaatgtCTAATGAAGTTACAGCTTGATGTGTTGATAGTACCTCTACAGTGTCTATCagttgttggattttggttgtcatgtctaacgaataaatgtcagtattggaTGTCAATATAATGTAGGTTTGAGGATGTTGGCTtggcattggattttggtcatacaacctaaaatcaaccaaatatcaacataatttgacatctttattggacgtcaaaataacattgtgcttagacactgactagacattgaattttggtcacctgaagtcaaaacctaaatttaacctaatattaacgtcttatgacaatGTGTACCTGTAGGGCTGATACAGTTTTGCCTATTCTCAATGAGAAAGTAGTGAAGCAACTTTGCCAGGCAGCATTGCTCTTAAAATTACTCTGTGTATCATCACCTTTATCTTTACTAAACATTTCTGTTTAAACGCTGTTTACAATTTAATGACGCACAAAAGCTTTTAAACTCATTTCTTATGGCTTAAGACACCTTTAACATTTATGTCTTGAACTTAATTATATTTGACTAACAGTATTAAGGCAAActccattaattttctttttattgtatTAGTGTTTACGTTCTCCTTTTACTGTGACATTAAATCATTTCTAAGTTTCAGACGTTTGTTGCAGCTCAACATAGCGTGCTTTTTAGACACTACACAAAACATAATGACTGTTGATTGGTTTGACACCTGTTCTgtgtctttctttctctttttgttAAAAACGATTTAAATGTACAAGTGTTACTTACTTCCCACTACCTGTGTACGTGTAAAAACATGCCAGACAATCTTGTTTTAGGCATTCCAGCGTTATCTGTTATTCAGAGTCTTAAACTATGGTGTGCTACGTGAGGATGGAGAAATTCCATTGACTGTTGCATCAGTTGCGTATGCTTGAAACACTGTATTTTACTGCTGTTGACAGATTCTGCCATGAAAATGGCATTCAGAGagcaagacaaaaataaaagcagcacATGATTTTCAGTGTTAA

Function

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0035999 tetrahydrofolate interconversion biological_process
GO:0005829 cytosol cellular_component
GO:0004477 methenyltetrahydrofolate cyclohydrolase activity molecular_function
GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004329 formate-tetrahydrofolate ligase activity molecular_function

KEGG:

id description
ko00670 One carbon pool by folate

ZFIN:

id description
ZDB-GENE-041001-133 Predicted to enable methenyltetrahydrofolate cyclohydrolase activity and methylenetetrahydrofolate dehydrogenase (NADP+) activity. Predicted to be involved in tetrahydrofolate interconversion. Predicted to act upstream of or within one-carbon metabolic process. Predicted to be active in cytosol. Is expressed in anterior neural tube and optic cup. Human ortholog(s) of this gene implicated in neural tube defect. Orthologous to human MTHFD1L (methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like).

Ensembl:

ensembl_id ENSDART00000183317

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036843 lncRNA downstream 19816 26445903 ~ 26458381 (-) True XLOC_018107
TCONS_00036842 lncRNA downstream 407248 26062545 ~ 26070949 (-) True XLOC_018101
TCONS_00035653 lncRNA downstream 765782 25710791 ~ 25712415 (-) True XLOC_018092
TCONS_00036841 lncRNA downstream 808275 25666049 ~ 25669922 (-) False XLOC_018091
TCONS_00035640 lncRNA downstream 872912 25600105 ~ 25605285 (-) True XLOC_018088
TCONS_00035696 lncRNA upstream 12400 26544250 ~ 26550760 (-) False XLOC_018110
TCONS_00035697 lncRNA upstream 16387 26548237 ~ 26550803 (-) False XLOC_018110
TCONS_00036845 lncRNA upstream 16387 26548237 ~ 26551233 (-) False XLOC_018110
TCONS_00036846 lncRNA upstream 99220 26631070 ~ 26708482 (-) False XLOC_018112
TCONS_00036847 lncRNA upstream 99220 26631070 ~ 26708526 (-) True XLOC_018112
TCONS_00035684 mRNA downstream 10743 26407758 ~ 26467454 (-) False XLOC_018106
TCONS_00035686 mRNA downstream 10890 26416490 ~ 26467307 (-) True XLOC_018106
TCONS_00035683 mRNA downstream 57085 26407758 ~ 26421112 (-) False XLOC_018106
TCONS_00035682 mRNA downstream 57085 26407758 ~ 26421112 (-) False XLOC_018106
TCONS_00035685 mRNA downstream 57258 26408837 ~ 26420939 (-) False XLOC_018106
TCONS_00035693 mRNA upstream 3492 26535342 ~ 26537171 (-) False XLOC_018109
TCONS_00035694 mRNA upstream 3850 26535700 ~ 26536581 (-) True XLOC_018109
TCONS_00035695 mRNA upstream 11833 26543683 ~ 26551210 (-) False XLOC_018110
TCONS_00035699 mRNA upstream 40606 26572456 ~ 26624042 (-) False XLOC_018111
TCONS_00035700 mRNA upstream 44523 26576373 ~ 26588736 (-) False XLOC_018111
TCONS_00035681 other downstream 86240 26390795 ~ 26391957 (-) True XLOC_018105
TCONS_00035675 other downstream 283356 26194726 ~ 26194841 (-) True XLOC_018103
TCONS_00035674 other downstream 358738 26119339 ~ 26119459 (-) True XLOC_018102
TCONS_00035651 other downstream 768848 25666049 ~ 25709349 (-) False XLOC_018091
TCONS_00035648 other downstream 833360 25642680 ~ 25644837 (-) True XLOC_018090
TCONS_00035698 other upstream 18811 26550661 ~ 26551233 (-) True XLOC_018110
TCONS_00035701 other upstream 52262 26584112 ~ 26588910 (-) True XLOC_018111
TCONS_00035715 other upstream 522245 27054095 ~ 27054220 (-) True XLOC_018118
TCONS_00035722 other upstream 692962 27224812 ~ 27225878 (-) True XLOC_018121
TCONS_00035726 other upstream 776566 27308416 ~ 27311615 (-) True XLOC_018122

Expression Profile

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