RNA id: TU811329


Basic Information

Item Value
RNA id TU811329
length 2679
lncRNA type antisense_over
GC content 0.48
exon number 3
gene id G713742
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 46399016 ~ 46406912 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAACTGTGAAACTTGAGAATGTGTTGATTTATTTCACAAAGCATGTTACATATCTATACTGTAGCCGGGTGGATAGACTCAGTAGGGAGGATGGACGGAAGGAATTGGAAGCGTAGAGGGACTTGTCTTAGGGCTCAGTAGCTTTGTCTCACCCCTTCCGCACACTCTCAATCCACTCATTGTAGTTGGACACCTTGGTGTAGATGCCCAGTTTGTCCTCGTCACCACAGCCCTCACCCCAGGACACTAGGCCGATGAGGAACCAGGTATCACGGTACAAGGTGACCATTGGGCCGCCACTGTCGCCCTCGCATGCGTCCTCCCGCCGTCCTAACACACCGGCGCACAGAACATTGCCTGTCACGTTGTTGACCATCTGACGGGCACACAGCTCATGCTCCACCAGCGGCACCTCGATGAAGTTGAGGGCTGAGGTGAAACGCTGGGAGTTCTGCTCCTCCTTGCCCCAACCCGTCACCACTGTGCGTGTGCCGTTGAGGTGGAGCACACCCTGGGCCAGAGCGCGGCTAGGGAGGCATGCCGGGAGGATGTACTCGgagaaggagacaggagaggCCAGGCGCAACAGGGCGATGTCGTTGTCCACCGTGACTTTGTCATAGTTCGGGTGAGAGAAGGTCTTGATCACCGGCACGGTGACTTCGGTGCCCTCCAACTTATAGCGCTCGTAGTCACCAGTCTGACGCTGAAGCGAAGGCTACTGGTCAGGCAATGGGCTGCGGTGAGGACCCAGTTCTTATCAATTAAGACCCCGCCGCAGTGAAACTTTCCCTTTGCATTCAACACAAGAgcctaagacacacacacacacacacacacaaacaactttATGAATTTTTAAAGCCGTATTACACTCCTAAATGTATGTTCGTCAGATGTTTTCAGATTTCCGCCGTAGTCTAATGTCAACATGATTCCACATCCCACGTCATTGGTTGTATAGGTCCAGTTAGATGTTTCAACCCCAAATGAATGAAAAAGATAATATTGCCCTGAAAATCTGGAAATGTCTATCTTTTCCCTTTATGGGCTGGGAAGTGGAATCATCTTGACACTAGACTACTTTTGATGTCAGTTGTAGTGCATGGGTACTGAAACAGATTCAATGTATGGGTAGTGTATGGATCAAGGTATGGATGGTACCTGCCAGGGGCTCTCCCCCTTCTTGCCCATTTCTCCCCCTACCAGCCAGGGCAGTAGTCCTTGAATGGGTTTACTGTAGGAGGTCTTGGCCACCAGTATCTGCCCACAGGAGTGGGCACCTTCGGGGACACAGTGTCTAGAGTTTTGGTGGAGACGGTATCCCTGGACACAGCTGCACGTACGCCTCAGGCCATCCTTGTGGTTTTGGCACTCATGGTCACAACCACCGTTGGCTattgcacaattagtggctgtGCTAGCTAAACACAACAGACCGTATCAAAGCCAAAACACAAAGAAGCACTGACACAAggaacagaaccagaaccagagacGTAACAAGTACTCTCCCAGACAAAACACACAAATCAGAAAAGATGTTTCACATCACAGACATGACAAACACATGTTAATGTTTGTTTCTCATATATTAGAAAACAGAAAGTTGATCACAGAAAAAGCTACACAACAAACACTCAAAAGTCAAGAACATCGCAGGTGCAAACGTATAAAACACAGCGGTGTCAGGGGCTCACGTTGGTCGCAGTCTTTTCCCTCAAATCCTAGATTGCAGCGGCAGGCATAGGACTGGTAGAGGTCCACACAGGTCCCATTCACACATGGGTTTGAAATGCACTGATTTCCATCTAAGATACACACCAAAGACAGATGTAACCCTGAACAAAAGCAGCCCAAACAAcatggcaacattttctctccatcACAGGACAGAAGCTTTGTACGCTGTGTCTGAGAGGTACAGTACATTGACACAGGGAGACCGACAGTGAAGCTGTTTTGGTAGAAAACATTTGCTTGTAGTTTAAACATTGTGTAGATAGATATCTGTTTGTTCATTCAACTGATTCCCGAATATACATGTTTGCCAATGTCCTTACAAAGTGTACAACATAAATAGTATAAAATGCAAGGCAGTTAGAAGGATATATGAGTCTATTCGGAAACAAAAGACTTCACTGACCTGTATAAACCGTCCAGAATTCCAACTGAAAAGTAGTAGAAAACTGTCAATGTCTATTATTCCTTACAGAAATGGTATACTCAAAAACGTAACATGTAATTGAATTAAAAACAGCTTACCGTGGCTTCCCTGGCTATGAAAATCTCCCTTGCCTCCTCAAACTCACATCTCTCCTCCAGGCATTCCCGCTCCATCGATGGAGGCTTCAGTTCCTCCAGGAAGGTGTTGGCCCTTTTGGAGCGCAGAAGCATGTGGGCCTCAGGACCActggaaaacactgaccaacaaaACCAGGTATGTTCataacagggagggactaccaggGAGGGACTACCATGTACCAGTGGTAAgctgtctcaggatggtaagttggtggttgaatatatccctctagtggtgtgggggctgtgctttggcaaagtgggtggggttatatccttcctgtttggccctgtccgggtgtgtcctcggatggggccacagtgtctcctgacccatcctgtctcagcctccagtatttatgctgcagtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU811324 lncRNA downstream 13875 46381566 ~ 46387729 (-) True G713738
TU811319 lncRNA downstream 24958 46365425 ~ 46376646 (-) True G713736
TU811239 lncRNA downstream 62560 46254476 ~ 46339044 (-) True G713660
TU811246 lncRNA downstream 128832 46264380 ~ 46272772 (-) True G713667
TU810845 lncRNA downstream 155175 46246065 ~ 46246429 (-) True G713293
TU811358 lncRNA upstream 53778 46460690 ~ 46462111 (-) True G713766
TU811363 lncRNA upstream 57072 46463984 ~ 46464406 (-) True G713771
TU811364 lncRNA upstream 57856 46464768 ~ 46465308 (-) True G713772
TU811365 lncRNA upstream 58710 46465622 ~ 46466193 (-) True G713773
TU811366 lncRNA upstream 59704 46466616 ~ 46466827 (-) True G713774
XM_036985501.1 mRNA downstream 6486 46388942 ~ 46395118 (-) False LOC110529956
XM_036985502.1 mRNA downstream 6486 46388942 ~ 46395118 (-) True LOC110529956
XM_021612641.2 mRNA downstream 75919 46309732 ~ 46325685 (-) False crfb16
XM_036985500.1 mRNA downstream 75919 46309732 ~ 46325685 (-) False crfb16
XM_021612637.2 mRNA downstream 160167 46163653 ~ 46241437 (-) True tmeff1a
XM_021612647.2 mRNA upstream 821 46407733 ~ 46417579 (-) True dusp28
XM_021612654.2 mRNA upstream 55713 46462625 ~ 46463692 (-) True sft2d3
XM_021612657.2 mRNA upstream 120738 46527650 ~ 46556891 (-) True si:ch1073-184j22.1
XM_036985506.1 mRNA upstream 244916 46651828 ~ 46760034 (-) False pex5lb
XM_021612661.2 mRNA upstream 244916 46651828 ~ 46803168 (-) False pex5lb
TU811283 other downstream 75923 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 943356 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 1862100 44538793 ~ 44539504 (-) True G711133
TU806781 other downstream 3230522 43170760 ~ 43171082 (-) True G709454
TU806574 other downstream 3680905 42719771 ~ 42720699 (-) True G709272
TU811888 other upstream 644555 47051467 ~ 47057660 (-) True LOC110529973
TU812043 other upstream 771512 47178424 ~ 47178736 (-) True G714425
TU813564 other upstream 1882030 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 2135379 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 2353000 48759912 ~ 48761163 (-) True G716463

Expression Profile