RNA id: TU810963



Basic Information


Item Value
RNA id TU810963
length 830
RNA type TUCP
GC content 0.49
exon number 1
gene id G713405
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 46465398 ~ 46466227 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atcaccgacaatgatgagggaggaggtcagagacctgaccgtgtggtttaaggacaacaacctctccctcaacgtgatcaagacaaaggagatgattgtggaaaaggaggaccgagcacgctcccattctcatcgacagggctgtagtggaacaggttgacagcttcaagtttcttggtgtccacatcaccaacaaactatcatggttcaaacacactaagacagtcatgaagagggcacgacaaagcctattcaccctcaggagactgaaatgatttggcatgggtcctcagatcctcaaaaggatctACAGCTGCcctatcgagagcatcctgactggttgcatcactgcctggtatggcaactgctcggcttctgaccacaaggcactacagagggtagtgcatacggcccagtacatcgtACGGCCcagtagtgcatatggcccagtacgtcctgccatccaggacctccagggagtgtcagaggaagaccctaaaaattgtcaaagaccccagccaccatagtcatagactgttctctctgctaccacacggcaagtggtaccggagcgccaagtctaggtccaaaaggcttcttaacagcttctacccccaagtcataagactcctgaacagctaatagCTActcagacccctcttttacgctgctgctactctctgtttataatctatgcatagtcactttaactctacctacatgtacatattacctcaattacctcgactaaccggtacccccgcatattgactctgtactggtacccccagaTTATAGCCTCGCttgttgttttactgctgctgtttaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU810962 lncRNA upstream 109 46464761 ~ 46465289 (+) True G713404
TU810929 lncRNA upstream 840 46463842 ~ 46464558 (+) True G713371
TU810924 lncRNA upstream 1796 46462627 ~ 46463602 (+) True G713366
TU810895 lncRNA upstream 91857 46318647 ~ 46373541 (+) True G713340
TU810844 lncRNA upstream 218994 46246079 ~ 46246404 (+) True G713292
TU810964 lncRNA downstream 66 46466293 ~ 46466733 (+) True G713406
TU810926 lncRNA downstream 1335 46467562 ~ 46468660 (+) True G713368
TU810965 lncRNA downstream 4580 46470807 ~ 46471261 (+) True G713407
TU810966 lncRNA downstream 5438 46471665 ~ 46471946 (+) True G713408
TU810973 lncRNA downstream 15111 46481338 ~ 46481599 (+) True G713415
XM_021612648.2 mRNA upstream 3272 46419920 ~ 46462126 (+) False wdr33
XM_021612650.2 mRNA upstream 3272 46419920 ~ 46462126 (+) False wdr33
XM_021612651.2 mRNA upstream 3272 46419920 ~ 46462126 (+) False wdr33
XM_021612652.2 mRNA upstream 3272 46419921 ~ 46462126 (+) False wdr33
XM_021612653.2 mRNA upstream 3272 46419921 ~ 46462126 (+) True wdr33
XM_021612655.2 mRNA downstream 43875 46510102 ~ 46513158 (+) False si:ch1073-184j22.2
XM_021612656.2 mRNA downstream 43897 46510124 ~ 46513158 (+) True si:ch1073-184j22.2
XM_036985504.1 mRNA downstream 128176 46594403 ~ 46614481 (+) False mfn1a
XM_021612658.2 mRNA downstream 128176 46594403 ~ 46619166 (+) False mfn1a
XM_021612659.2 mRNA downstream 128176 46594403 ~ 46619166 (+) False mfn1a
TU809392 other upstream 670849 45793269 ~ 45794549 (+) True G711912
TU809309 other upstream 818021 45646857 ~ 45647377 (+) True G711845
TU808451 other upstream 2016425 44448584 ~ 44448973 (+) True G711021
TU806817 other upstream 3267756 43196560 ~ 43197642 (+) True G709490
TU805563 other upstream 5081215 41380025 ~ 41384183 (+) True G708448
TU811150 other downstream 249688 46715915 ~ 46769246 (+) True G713574
TU813740 other downstream 2071516 48537743 ~ 48544164 (+) True G716035
TU813841 other downstream 2294116 48760343 ~ 48760740 (+) True G716133
TU814604 other downstream 2866614 49332841 ~ 49333772 (+) True G716862
TU814748 other downstream 3079985 49546212 ~ 49547085 (+) True G716993

Expression Profile