RNA id: TU811365


Basic Information

Item Value
RNA id TU811365
length 572
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G713773
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 46465622 ~ 46466193 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAAtctgggggtaccagtacagagtcaatatgcgggggtaccggttagtcgaggtaattgaggtaatatgtacatgtaggtagagttaaagtgactatgcatagattataaacagagagtagcagcagcgtaaaagaggggtctgagTAGctattagctgttcaggagtcttatgacttgggggtagaagctgttaagaagccttttggacctagacttggcgctccggtaccacttgccgtgtggtagcagagagaacagtctatgactatggtggctggggtctttgacaatttttagggtcttcctctgacactccctggaggtcctggatggcaggacgtactgggccatatgcactactgGGCCGTacgatgtactgggccgtatgcactaccctctgtagtgccttgtggtcagaagccgagcagttgccataccaggcagtgatgcaaccagtcaggatgctctcgataggGCAGCTGTagatccttttgaggatctgaggacccatgccaaatcatttcagtctcctgagggtgaataggctttgtcgtgccctcttcatgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU811364 lncRNA downstream 314 46464768 ~ 46465308 (-) True G713772
TU811363 lncRNA downstream 1216 46463984 ~ 46464406 (-) True G713771
TU811358 lncRNA downstream 3511 46460690 ~ 46462111 (-) True G713766
TU811330 lncRNA downstream 58710 46399016 ~ 46406912 (-) False G713742
TU811366 lncRNA upstream 423 46466616 ~ 46466827 (-) True G713774
TU811367 lncRNA upstream 1449 46467642 ~ 46468423 (-) True G713775
TU811368 lncRNA upstream 2411 46468604 ~ 46469042 (-) True G713776
TU811369 lncRNA upstream 3668 46469861 ~ 46470223 (-) True G713777
TU811370 lncRNA upstream 4890 46471083 ~ 46471285 (-) True G713778
XM_021612654.2 mRNA downstream 1930 46462625 ~ 46463692 (-) True sft2d3
XM_021612647.2 mRNA downstream 48043 46407733 ~ 46417579 (-) True dusp28
XM_036985501.1 mRNA downstream 70504 46388942 ~ 46395118 (-) False LOC110529956
XM_036985502.1 mRNA downstream 70504 46388942 ~ 46395118 (-) True LOC110529956
XM_036985500.1 mRNA downstream 139937 46309732 ~ 46325685 (-) False crfb16
XM_021612657.2 mRNA upstream 61457 46527650 ~ 46556891 (-) True si:ch1073-184j22.1
XM_036985506.1 mRNA upstream 185635 46651828 ~ 46760034 (-) False pex5lb
XM_021612661.2 mRNA upstream 185635 46651828 ~ 46803168 (-) False pex5lb
XM_036985507.1 mRNA upstream 185635 46651828 ~ 46803168 (-) False pex5lb
XM_036985508.1 mRNA upstream 185635 46651828 ~ 46803168 (-) False pex5lb
TU811283 other downstream 139941 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 1007374 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 1926118 44538793 ~ 44539504 (-) True G711133
TU806781 other downstream 3294540 43170760 ~ 43171082 (-) True G709454
TU806574 other downstream 3744923 42719771 ~ 42720699 (-) True G709272
TU811888 other upstream 585274 47051467 ~ 47057660 (-) True LOC110529973
TU812043 other upstream 712231 47178424 ~ 47178736 (-) True G714425
TU813564 other upstream 1822749 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 2076098 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 2293719 48759912 ~ 48761163 (-) True G716463

Expression Profile