RNA id: TU811371



Basic Information


Item Value
RNA id TU811371
length 204
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G713779
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 46471478 ~ 46471681 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aataaataataactcCGCCAATTTGCATGGTtaagtgtctatgtgtgtaaGATGTAGTGCGTATAGTCTTAATATTCATGAtgataattgtaatccatatTGTATCACCATCATATTTGCATCCTAATTACctttaacataattgaaaaacacatcccagcatttccaCAGCAATTGACAtttcacatgatcatgaaagagacc

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU811370 lncRNA downstream 193 46471083 ~ 46471285 (-) True G713778
TU811369 lncRNA downstream 1255 46469861 ~ 46470223 (-) True G713777
TU811368 lncRNA downstream 2436 46468604 ~ 46469042 (-) True G713776
TU811367 lncRNA downstream 3055 46467642 ~ 46468423 (-) True G713775
TU811366 lncRNA downstream 4651 46466616 ~ 46466827 (-) True G713774
TU811378 lncRNA upstream 10915 46482596 ~ 46482817 (-) True G713786
TU811386 lncRNA upstream 19681 46491362 ~ 46491703 (-) True G713794
TU811396 lncRNA upstream 53094 46524775 ~ 46526683 (-) True G713804
TU811443 lncRNA upstream 103105 46574786 ~ 46575007 (-) True G713848
TU811446 lncRNA upstream 105610 46577291 ~ 46577500 (-) True G713851
XM_021612654.2 mRNA downstream 7786 46462625 ~ 46463692 (-) True sft2d3
XM_021612647.2 mRNA downstream 53899 46407733 ~ 46417579 (-) True dusp28
XM_036985501.1 mRNA downstream 76360 46388942 ~ 46395118 (-) False LOC110529956
XM_036985502.1 mRNA downstream 76360 46388942 ~ 46395118 (-) True LOC110529956
XM_036985500.1 mRNA downstream 145793 46309732 ~ 46325685 (-) False crfb16
XM_021612657.2 mRNA upstream 55969 46527650 ~ 46556891 (-) True si:ch1073-184j22.1
XM_036985506.1 mRNA upstream 180147 46651828 ~ 46760034 (-) False pex5lb
XM_021612661.2 mRNA upstream 180147 46651828 ~ 46803168 (-) False pex5lb
XM_036985507.1 mRNA upstream 180147 46651828 ~ 46803168 (-) False pex5lb
XM_036985508.1 mRNA upstream 180147 46651828 ~ 46803168 (-) False pex5lb
TU811283 other downstream 145797 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 1013230 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 1931974 44538793 ~ 44539504 (-) True G711133
TU806781 other downstream 3300396 43170760 ~ 43171082 (-) True G709454
TU806574 other downstream 3750779 42719771 ~ 42720699 (-) True G709272
TU811888 other upstream 579786 47051467 ~ 47057660 (-) True LOC110529973
TU812043 other upstream 706743 47178424 ~ 47178736 (-) True G714425
TU813564 other upstream 1817261 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 2070610 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 2288231 48759912 ~ 48761163 (-) True G716463

Expression Profile


TU811371 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
End of interactive chart.

TU811371 Expression in each Bioproject

Bar chart with 11 bars.
TU811371 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
End of interactive chart.