RNA id: TU811470


Basic Information

Item Value
RNA id TU811470
length 1733
lncRNA type antisense_over
GC content 0.46
exon number 3
gene id G713870
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 46596479 ~ 46607316 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAACAGCATGCAgatacataaaaatggtatccatgagttcataggactctgggtaagtagataAACGGTCTAAATCTTGAAATATCACAGTATCCCTTTAATCTAATGATTAATAATCAATACTGTTTAGGTGCGTATGGCAGTAGCACATTACCAATGCTCCTATAAAAAACTGGGGGAGAAACTCACTTCCTTTCGGCAGATGCGATATTTATGGCATCCATGACTGCTTTGATTGCTTCTGTGATCTGCCACGCCCTGAGCGTGTGCTGCTCAAACTTGGTCTTGACCGCAGAGTGTGAGATGAACTCCTGTGCAGTCGTAAATACAGTAAGTTAGTGTGACGATGCCAATCAACGTGAAATTGACAATGATATTACAATGGACCATGACAATCAGTTATGCTTCAGTGCTTGCCTCAAAAGTCCTCTCGAATCTCTGGAACTCCCTCAGTCTCTCGTGGAATCCCTCTGCTAAAGCGCCACCTAGAAAGACCAGCAGAAGTCCAAATAAAAATAATAGCCGAGGACCTCCAGCATATTAAGTTATAGTTAATGTGGGCATTCATGGATGGCCGGGTAAGGTGAGCAGTTCAAAGCTTTAAGATAGCAATGTTTTTGAGGCGAGACAGTAACAGGAGAGAGATGCCTATTACAGGGCCGATGGAGGAAAATCTGTCAGGAGTGTGCTGGCAACTGCTTGTCAACTTCTTATGAATGCCGATGTATTCAAGTAAATTGATATTTTGCCTTCTAAATTACCATAACCATATCAATATCGTATAATTATTGTTCCCAAACCTGATCAGCGAGCCAgcccagccagtcaatcagcGTCATGCAACCTCGCCCAACTAGCCTTTGGTCCCTCCTCACTGATCTCACCTGTCTCGGGCATGCCCTGGGCACAGTGCATCCTGGAGCTGAGCACCTCCTTGGCCGACACAAAGAAGATTCTGCCCGGAGCCTCCTCTTGTCTCACCACCCTCAGCTCCTCCACCAGGAAACTCACACAGCGGTCCATGTGCTGCTTACGCACCTGAGGGAGCTCATTATCCATTAGGTTTGACATTTTGGTCACTCAAAAAGTAGGCAAATCGAATGAAGGACTCAATGAAGCGCACCATTAGCCCTTTATAAGAGGGACCCATCTTGTTTTTCTCACAGCTAAACTACACAAGACATGTAATGTAAGCATAGTGTCCACAAAGCGCAAGCATGGATGACACTGAGCCACTGTGAGCAAAGAGAAATGATACTCCAGCTGAGCAAGCAGCAAGTCAATGAAGCGATCTTGCGCTGCTTAAGTGTCTATTTCAAGTATTTCACTCCTGCTTTCAGTGTTCTCAACAAGCGGATTTCACTATTGATTGATCACGATTGATCTCCTTTTGCTGCTTCTGGTGTAACATGGCAAAAACAACGCTTATGAAATGCTTGCACTATGCTTGCAGTGTAGTTTCACAGTCAAACTCACTTCATCAATGTACTCGGGCTCCCACGCAGAGGCATCCCAGCGGTTGTGCAGGATAAAAATGTTTGGCTTGGATATTCGCTCGCTCACTTTGTGGAAAAACAGCTTCTCtgtgTTCATCAGTGTGGATTCTGCATTGCCCACCAACACAAAGACGTCAGCATCCAGACAGAACTTGTCGATCCAGCTGTCCAGGTAAGAGGTCACATCAGTCCCTGGGCTGTCCATAATAACAAGGTCATCCCTCAGCAGGGCACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU811467 lncRNA downstream 1303 46594393 ~ 46595176 (-) True G713869
TU811446 lncRNA downstream 18979 46577291 ~ 46577500 (-) True G713851
TU811443 lncRNA downstream 21472 46574786 ~ 46575007 (-) True G713848
TU811396 lncRNA downstream 69796 46524775 ~ 46526683 (-) True G713804
TU811386 lncRNA downstream 104776 46491362 ~ 46491703 (-) True G713794
TU811484 lncRNA upstream 19293 46626609 ~ 46627141 (-) True G713884
TU811487 lncRNA upstream 22266 46629582 ~ 46629799 (-) True G713887
TU811489 lncRNA upstream 24210 46631526 ~ 46631850 (-) True G713889
TU811490 lncRNA upstream 26046 46633362 ~ 46633615 (-) True G713890
TU811491 lncRNA upstream 28358 46635674 ~ 46635925 (-) True G713891
XM_021612657.2 mRNA downstream 39588 46527650 ~ 46556891 (-) True si:ch1073-184j22.1
XM_021612654.2 mRNA downstream 132787 46462625 ~ 46463692 (-) True sft2d3
XM_021612647.2 mRNA downstream 178900 46407733 ~ 46417579 (-) True dusp28
XM_036985501.1 mRNA downstream 201361 46388942 ~ 46395118 (-) False LOC110529956
XM_036985506.1 mRNA upstream 44512 46651828 ~ 46760034 (-) False pex5lb
XM_021612661.2 mRNA upstream 44512 46651828 ~ 46803168 (-) False pex5lb
XM_036985507.1 mRNA upstream 44512 46651828 ~ 46803168 (-) False pex5lb
XM_036985508.1 mRNA upstream 44512 46651828 ~ 46803168 (-) False pex5lb
XM_036985505.1 mRNA upstream 44512 46651828 ~ 46803169 (-) True pex5lb
TU811283 other downstream 270798 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 1138231 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 2056975 44538793 ~ 44539504 (-) True G711133
TU806781 other downstream 3425397 43170760 ~ 43171082 (-) True G709454
TU806574 other downstream 3875780 42719771 ~ 42720699 (-) True G709272
TU811888 other upstream 444151 47051467 ~ 47057660 (-) True LOC110529973
TU812043 other upstream 571108 47178424 ~ 47178736 (-) True G714425
TU813564 other upstream 1681626 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 1934975 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 2152596 48759912 ~ 48761163 (-) True G716463

Expression Profile