RNA id: TCONS_00035691


Basic Information

Item Value
RNA id TCONS_00035691
length 541
RNA type processed_transcript
GC content 0.51
exon number 4
gene id XLOC_018108
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 26478197 ~ 26532167 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCGCGGTGGCCAGTGAGATCATGGCCATCCTCGCTCTGACTGATGGATTGGCTGACATGCGGGCCAGACTGGGGCGGATGGTTGTTGGCAGCAGCAGGAATGGACAGGCGATCACTGCAGATgacctgGGTGTGACCGGGGCTTTGGCCGTCCTCATGAAAGATGCTATCAAACCCACACTAATGCAGACACTGGAGGGCACTCCAGTGTTTGTGCATGCAGGGCCTTTCGCTAACATCGCCCATGGGAACTCCTCTGTCTTGGCAGATAAGCTGGCTCTTAAACTAGTTGGAGAAGAGGGCTATGTTGCGATGTGCTCCAGACACTGAAGGAATGCTGGGAATTACAGAGGCTCTGTGGTCCTCGCTAAGAGCAGTGGAAGCTTCACCCCTTCATTTAAGGACAGGCTGAAGAGTGTGTGTTTACAATGAAAACACTGCCTACCAAATCAGCCCAAGAGCTGTGTTGAGTTACAAACACTACAATTTGAGATGCCAGCATGAAAATGGGAAATTCTTTTGTAAAGGATCTTTTAGAGCA

Function

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0035999 tetrahydrofolate interconversion biological_process
GO:0005829 cytosol cellular_component
GO:0004477 methenyltetrahydrofolate cyclohydrolase activity molecular_function
GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004329 formate-tetrahydrofolate ligase activity molecular_function

KEGG:

id description
ko00670 One carbon pool by folate

ZFIN:

id description
ZDB-GENE-041001-133 Predicted to enable methenyltetrahydrofolate cyclohydrolase activity and methylenetetrahydrofolate dehydrogenase (NADP+) activity. Predicted to be involved in tetrahydrofolate interconversion. Predicted to act upstream of or within one-carbon metabolic process. Predicted to be active in cytosol. Is expressed in anterior neural tube and optic cup. Human ortholog(s) of this gene implicated in neural tube defect. Orthologous to human MTHFD1L (methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like).

Ensembl:

ensembl_id ENSDART00000138058

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036843 lncRNA downstream 44105 26445903 ~ 26458381 (-) True XLOC_018107
TCONS_00036842 lncRNA downstream 431537 26062545 ~ 26070949 (-) True XLOC_018101
TCONS_00035653 lncRNA downstream 790071 25710791 ~ 25712415 (-) True XLOC_018092
TCONS_00036841 lncRNA downstream 832564 25666049 ~ 25669922 (-) False XLOC_018091
TCONS_00035640 lncRNA downstream 897201 25600105 ~ 25605285 (-) True XLOC_018088
TCONS_00035696 lncRNA upstream 32977 26544250 ~ 26550760 (-) False XLOC_018110
TCONS_00035697 lncRNA upstream 36964 26548237 ~ 26550803 (-) False XLOC_018110
TCONS_00036845 lncRNA upstream 36964 26548237 ~ 26551233 (-) False XLOC_018110
TCONS_00036846 lncRNA upstream 119797 26631070 ~ 26708482 (-) False XLOC_018112
TCONS_00036847 lncRNA upstream 119797 26631070 ~ 26708526 (-) True XLOC_018112
TCONS_00035689 mRNA downstream 10919 26480288 ~ 26491567 (-) False XLOC_018108
TCONS_00035684 mRNA downstream 35032 26407758 ~ 26467454 (-) False XLOC_018106
TCONS_00035686 mRNA downstream 35179 26416490 ~ 26467307 (-) True XLOC_018106
TCONS_00035683 mRNA downstream 81374 26407758 ~ 26421112 (-) False XLOC_018106
TCONS_00035682 mRNA downstream 81374 26407758 ~ 26421112 (-) False XLOC_018106
TCONS_00035692 mRNA upstream 13976 26525249 ~ 26531850 (-) True XLOC_018108
TCONS_00035693 mRNA upstream 24069 26535342 ~ 26537171 (-) False XLOC_018109
TCONS_00035694 mRNA upstream 24427 26535700 ~ 26536581 (-) True XLOC_018109
TCONS_00035695 mRNA upstream 32410 26543683 ~ 26551210 (-) False XLOC_018110
TCONS_00035699 mRNA upstream 61183 26572456 ~ 26624042 (-) False XLOC_018111
TCONS_00035690 other downstream 13541 26480428 ~ 26488945 (-) False XLOC_018108
TCONS_00035681 other downstream 110529 26390795 ~ 26391957 (-) True XLOC_018105
TCONS_00035675 other downstream 307645 26194726 ~ 26194841 (-) True XLOC_018103
TCONS_00035674 other downstream 383027 26119339 ~ 26119459 (-) True XLOC_018102
TCONS_00035651 other downstream 793137 25666049 ~ 25709349 (-) False XLOC_018091
TCONS_00035698 other upstream 39388 26550661 ~ 26551233 (-) True XLOC_018110
TCONS_00035701 other upstream 72839 26584112 ~ 26588910 (-) True XLOC_018111
TCONS_00035715 other upstream 542822 27054095 ~ 27054220 (-) True XLOC_018118
TCONS_00035722 other upstream 713539 27224812 ~ 27225878 (-) True XLOC_018121
TCONS_00035726 other upstream 797143 27308416 ~ 27311615 (-) True XLOC_018122

Expression Profile

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