RNA id: TU811565



Basic Information


Item Value
RNA id TU811565
length 281
lncRNA type intronic
GC content 0.39
exon number 2
gene id G713962
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 46790585 ~ 46790895 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gttgTCCTTGGCTCAGAAAGTGTAGTAGTGTGGGATCAATAGCTTCTCATTAGTGTgaaagatcttgagaatcagctgtacatgtgatggaagaatgcactgtgcatgcagagagTTGCAGTTCCATTGAATTGTGGATAGTTTAACccaaatatgccacaagacctagaattgccttatgtgtatcccacaaaaaaaggttcactgttataagctaacttttttttaaatgaatttaagcaaaattccagggcttaacgaccctttgcaaccctacacAC

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU811452 lncRNA downstream 70760 46648700 ~ 46719825 (-) True G713855
TU811491 lncRNA downstream 154660 46635674 ~ 46635925 (-) True G713891
TU811490 lncRNA downstream 156970 46633362 ~ 46633615 (-) True G713890
TU811489 lncRNA downstream 158735 46631526 ~ 46631850 (-) True G713889
TU811487 lncRNA downstream 160786 46629582 ~ 46629799 (-) True G713887
TU811623 lncRNA upstream 59808 46850703 ~ 46851098 (-) True G714020
TU811776 lncRNA upstream 70421 46861316 ~ 46861673 (-) True G714168
TU811798 lncRNA upstream 108529 46899424 ~ 46899756 (-) True G714190
TU811801 lncRNA upstream 112668 46903563 ~ 46903762 (-) True G714193
TU811808 lncRNA upstream 123369 46914264 ~ 46951738 (-) True G714200
XM_036985506.1 mRNA downstream 30551 46651828 ~ 46760034 (-) False pex5lb
XM_021612657.2 mRNA downstream 233694 46527650 ~ 46556891 (-) True si:ch1073-184j22.1
XM_021612654.2 mRNA downstream 326893 46462625 ~ 46463692 (-) True sft2d3
XM_021612647.2 mRNA downstream 373006 46407733 ~ 46417579 (-) True dusp28
XM_036985501.1 mRNA downstream 395467 46388942 ~ 46395118 (-) False LOC110529956
XM_021612671.2 mRNA upstream 224990 47015885 ~ 47027075 (-) False nebl
XR_002474465.2 mRNA upstream 226641 47017536 ~ 47027075 (-) True nebl
XM_021612670.2 mRNA upstream 236299 47027194 ~ 47035362 (-) True dnajc1
XM_021612673.2 mRNA upstream 260178 47051073 ~ 47057707 (-) False LOC110529973
XM_021612672.2 mRNA upstream 260178 47051073 ~ 47067973 (-) False LOC110529973
TU811283 other downstream 464904 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 1332337 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 2251081 44538793 ~ 44539504 (-) True G711133
TU806781 other downstream 3619503 43170760 ~ 43171082 (-) True G709454
TU806574 other downstream 4069886 42719771 ~ 42720699 (-) True G709272
TU811888 other upstream 260572 47051467 ~ 47057660 (-) True LOC110529973
TU812043 other upstream 387529 47178424 ~ 47178736 (-) True G714425
TU813564 other upstream 1498047 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 1751396 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 1969017 48759912 ~ 48761163 (-) True G716463

Expression Profile


TU811565 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

TU811565 Expression in each Bioproject

Bar chart with 20 bars.
TU811565 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.