RNA id: TU811849



Basic Information


Item Value
RNA id TU811849
length 292
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G714240
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 46974045 ~ 46974336 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TAAGAATCTATATATCGACAGAGGATGGACTCCAAGAAGCGCCAAGAGGCTGGGACTAGCCTGAGCGCCTGCAATAGGCTGAGCAAGTCTAAACCACGCTcagcctctactgtgataggccaacagacgggttggaactatgtctatcacagtataagaaCAGCTGTTTACTTACATCCTGTCAGTTCTCGGTTAACCCATTGaacccgtatatacgaaaattgcatttaccatttATTGCTTACTTAATAAAAAGCAGACATAGAATAAAATCCGTGACTTAGTGTTCTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU811844 lncRNA downstream 976 46969881 ~ 46973069 (-) True G714236
TU811843 lncRNA downstream 4208 46969202 ~ 46969837 (-) True G714235
TU811840 lncRNA downstream 9996 46963776 ~ 46964049 (-) True G714232
TU811808 lncRNA downstream 22307 46914264 ~ 46951738 (-) True G714200
TU811801 lncRNA downstream 70283 46903563 ~ 46903762 (-) True G714193
TU811868 lncRNA upstream 22300 46996636 ~ 46996931 (-) True G714259
TU811872 lncRNA upstream 24059 46998395 ~ 46998644 (-) True G714263
TU811874 lncRNA upstream 26147 47000483 ~ 47000699 (-) True G714265
TU811875 lncRNA upstream 26709 47001045 ~ 47001685 (-) True G714266
TU811871 lncRNA upstream 29631 47003967 ~ 47010269 (-) True G714262
XM_036985505.1 mRNA downstream 170876 46651828 ~ 46803169 (-) True pex5lb
XM_021612661.2 mRNA downstream 170877 46651828 ~ 46803168 (-) False pex5lb
XM_036985507.1 mRNA downstream 170877 46651828 ~ 46803168 (-) False pex5lb
XM_036985508.1 mRNA downstream 170877 46651828 ~ 46803168 (-) False pex5lb
XM_036985506.1 mRNA downstream 214011 46651828 ~ 46760034 (-) False pex5lb
XM_021612671.2 mRNA upstream 41549 47015885 ~ 47027075 (-) False nebl
XR_002474465.2 mRNA upstream 43200 47017536 ~ 47027075 (-) True nebl
XM_021612670.2 mRNA upstream 52858 47027194 ~ 47035362 (-) True dnajc1
XM_021612673.2 mRNA upstream 76737 47051073 ~ 47057707 (-) False LOC110529973
XM_021612672.2 mRNA upstream 76737 47051073 ~ 47067973 (-) False LOC110529973
TU811283 other downstream 648364 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 1515797 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 2434541 44538793 ~ 44539504 (-) True G711133
TU806781 other downstream 3802963 43170760 ~ 43171082 (-) True G709454
TU806574 other downstream 4253346 42719771 ~ 42720699 (-) True G709272
TU811888 other upstream 77131 47051467 ~ 47057660 (-) True LOC110529973
TU812043 other upstream 204088 47178424 ~ 47178736 (-) True G714425
TU813564 other upstream 1314606 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 1567955 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 1785576 48759912 ~ 48761163 (-) True G716463

Expression Profile