RNA id: TU812036



Basic Information


Item Value
RNA id TU812036
length 315
lncRNA type antisense_over
GC content 0.57
exon number 2
gene id G714418
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 47169327 ~ 47169929 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGTGTTTAAGTAGTAGGGCTCTGAGGACATTGGCCCGGTCCTCCACTTTGATCTGGTCAGAGATTATCATCTGCTCCACCACCTGATGGGCAATGCCAGGCAAGGTGTGCTGGTTCAGGTCCAGCAGCACCcaccgTGGGAGATGGTCTTGCGGAGCTCCAGAAGACTACGGAAGGAGAGTGAGGCAACGTGGGGTTTGCCCCAGCggtccgtctcctcctccacgtCCTCCTCAAATTTGATCCAGCGGGCCGTCTCCCGCCACTGCAACTCCTGGTTCTTATCCATCACCAACTCGTTCAGCTCCACAAACA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU812031 lncRNA downstream 5187 47163855 ~ 47164140 (-) True G714414
TU812007 lncRNA downstream 49897 47118743 ~ 47119430 (-) True G714393
TU811951 lncRNA downstream 60637 47108335 ~ 47108690 (-) True G714337
TU811944 lncRNA downstream 67183 47101848 ~ 47102144 (-) True G714330
TU811932 lncRNA downstream 79575 47089515 ~ 47089752 (-) True G714318
TU812038 lncRNA upstream 1895 47171824 ~ 47172422 (-) True G714420
TU812039 lncRNA upstream 2680 47172609 ~ 47172872 (-) True G714421
TU812040 lncRNA upstream 3059 47172988 ~ 47174008 (-) True G714422
TU812041 lncRNA upstream 6870 47176799 ~ 47177022 (-) True G714423
TU812042 lncRNA upstream 7790 47177719 ~ 47177947 (-) True G714424
XM_021612672.2 mRNA downstream 101354 47051073 ~ 47067973 (-) False LOC110529973
XM_021612673.2 mRNA downstream 111620 47051073 ~ 47057707 (-) False LOC110529973
XM_021612670.2 mRNA downstream 133965 47027194 ~ 47035362 (-) True dnajc1
XM_021612671.2 mRNA downstream 142252 47015885 ~ 47027075 (-) False nebl
XM_021612689.2 mRNA upstream 60158 47230087 ~ 47260839 (-) False LOC110529976
XM_021612686.2 mRNA upstream 60158 47230087 ~ 47260840 (-) False LOC110529976
XM_021612688.2 mRNA upstream 60158 47230087 ~ 47260840 (-) False LOC110529976
XM_021612685.2 mRNA upstream 60158 47230087 ~ 47260844 (-) False LOC110529976
XM_021612687.2 mRNA upstream 60158 47230087 ~ 47260844 (-) False LOC110529976
TU811888 other downstream 111667 47051467 ~ 47057660 (-) True LOC110529973
TU811283 other downstream 843646 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 1711079 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 2629823 44538793 ~ 44539504 (-) True G711133
TU806781 other downstream 3998245 43170760 ~ 43171082 (-) True G709454
TU812043 other upstream 8495 47178424 ~ 47178736 (-) True G714425
TU813564 other upstream 1119013 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 1372362 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 1589983 48759912 ~ 48761163 (-) True G716463
TU814220 other upstream 1612192 48782121 ~ 48782515 (-) True G716480

Expression Profile


TU812036 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: -0.5 to 0.5.
End of interactive chart.

TU812036 Expression in each Bioproject

Bar chart with 2 bars.
TU812036 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 0.25.
End of interactive chart.